Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25134

Metabolite ID
P25134
Deionized mass
447.2155 Da
Average m/z
448.2230
Average RT
14.6252
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
22
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

22 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)1.715e-16
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)1.715e-16
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.956e-11
Glyma.01G016500 hypothetical protein AT4G25960:ABCB2:P-glycoprotein 2 1Chr01:1573790–1583422 (+)9.369e-13
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)1.433e-12
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)1.98e-11
Glyma.06G037300 hypothetical protein AT2G26540:HEMD:uroporphyrinogen-III synthase family protein 1Chr06:2861369–2870869 (-)2.53e-11
Glyma.06G038700 hypothetical protein AT4G33360:FLDH:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:2935243–2937127 (+)8.045e-13
Glyma.06G038900 hypothetical protein AT5G42700:AT5G42700:AP2/B3-like transcriptional factor family protein 1Chr06:2943383–2947586 (+)2.442e-12
Glyma.06G039000 hypothetical protein AT1G47380:AT1G47380:Protein phosphatase 2C family protein 1Chr06:2949704–2954653 (+)1.552e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.714e-16
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.715e-16
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.714e-16
Glyma.08G123100 hypothetical protein AT3G20050:TCP-1:T-complex protein 1 alpha subunit 1Chr08:9468076–9475710 (-)4.933e-13
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)4.271e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)7.717e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)7.267e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)2.212e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.285e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.285e-12
Glyma.18G266200 hypothetical protein NA 1Chr18:55065716–55066843 (-)3.48e-11
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)5.036e-11