Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25124

Metabolite ID
P25124
Deionized mass
223.0896 Da
Average m/z
224.0966
Average RT
14.6221
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
55
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

55 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G226300 hypothetical protein NA 7Chr18:51471540–51498344 (+)2.593e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.536e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.568e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.68e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.68e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.632e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.536e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.082e-13
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)6.888e-13
Glyma.03G145700 hypothetical protein AT3G58030:AT3G58030:RING/U-box superfamily protein 1Chr03:36109689–36112241 (+)7.796e-12
Glyma.03G145900 hypothetical protein AT5G06700:AT5G06700:trichome birefringence-like protein (DUF828) 1Chr03:36127816–36131230 (-)2.114e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)2.743e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.586e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.135e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.418e-15
Glyma.07G223600 hypothetical protein NA 1Chr07:40077049–40082294 (+)2.391e-11
Glyma.08G039600 hypothetical protein NA 1Chr08:3107698–3116601 (-)6.398e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)7.702e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.568e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.568e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.568e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.568e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)1.795e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)5.299e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.557e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)9.426e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)9.426e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)9.426e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)9.426e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)8.538e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)8.539e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.669e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.397e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.397e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.68e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)9.742e-11
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)2.71e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.632e-12
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)8.105e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.21e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.051e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.21e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.21e-12
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)3.155e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.324e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.324e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)4.257e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)2.378e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.38e-13
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)1.633e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.842e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.842e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.996e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.468e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6.206e-16