Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25116

Metabolite ID
P25116
Deionized mass
388.1529 Da
Average m/z
389.1591
Average RT
14.6196
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
120
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

120 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)1.616e-11
Glyma.01G045600 hypothetical protein NA 2Chr01:5242432–5245038 (-)1.858e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)9.823e-11
Glyma.09G053800 hypothetical protein NA 2Chr09:4737413–4755632 (-)8.934e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.188e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.775e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.104e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)7.384e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.803e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)3.08e-11
Glyma.19G127700 hypothetical protein AT5G12250:TUB6:beta-6 tubulin 2Chr19:38632803–38635633 (+)3.024e-14
Glyma.20G021900 hypothetical protein AT5G37340:AT5G37340:ZPR1 zinc-finger domain protein 2Chr20:2227480–2247807 (+)3.361e-13
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)7.887e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)1.858e-11
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)3.802e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.873e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.728e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)9.713e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.863e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.863e-14
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)5.209e-14
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)1.934e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.354e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.107e-16
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.615e-13
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)1.827e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)7.627e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.649e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)2.203e-12
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)8.921e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.281e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.804e-14
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)8.077e-13
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)9.059e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.065e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)4.949e-13
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)3.989e-13
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)9.145e-13
Glyma.07G059100 hypothetical protein NA 1Chr07:5282519–5283075 (-)3.664e-11
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)8.244e-14
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)8.03e-16
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)3.015e-12
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)3.346e-12
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)8.609e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)8.609e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)2.545e-11
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)2.724e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)2.982e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.992e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.719e-11
Glyma.09G210700 hypothetical protein AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr09:43466944–43471858 (-)5.681e-11
Glyma.09G212100 hypothetical protein AT4G19040:EDR2:ENHANCED DISEASE RESISTANCE 2 1Chr09:43601727–43616030 (-)8.294e-12
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)8.576e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)7.041e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)9.75e-13
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)7.776e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)1.59e-12
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)5.015e-11
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)6.285e-11
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)9.111e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)8.236e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.6e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.6e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.131e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.131e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.416e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.715e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.715e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)4.498e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.428e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)7.428e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)7.428e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)6.801e-15
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)1.757e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)9.078e-11
Glyma.14G119800 hypothetical protein AT1G43850:SEU:SEUSS transcriptional co-regulator 1Chr14:16751592–16763348 (-)1.465e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.104e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.324e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.116e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.324e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.324e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.577e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.051e-14
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)7.62e-13
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)7.62e-13
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)2.647e-13
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)2.187e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.859e-13
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)1.866e-12
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)9.5e-13
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)9.12e-15
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)4.943e-11
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)1.747e-12
Glyma.16G058800 hypothetical protein AT5G57890:AT5G57890:Glutamine amidotransferase type 1 family protein__AT1G25155:AT1G24909:Glutamine amidotransferase ty… 1Chr16:5763908–5768668 (+)5.257e-11
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)4.5e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.981e-13
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)5.638e-12
Glyma.16G138500 hypothetical protein NA 1Chr16:29564872–29566190 (+)8.487e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)1.518e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.01e-13
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)3.01e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)2.309e-11
Glyma.16G159100 hypothetical protein NA 1Chr16:31889835–31894662 (+)5.273e-11
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)4.645e-11
Glyma.16G165300 hypothetical protein NA 1Chr16:32447317–32449688 (-)1.069e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.079e-12
Glyma.18G042300 hypothetical protein AT1G66140:ZFP4:zinc finger protein 4 1Chr18:3586380–3589732 (+)1.425e-11
Glyma.18G042500 hypothetical protein NA 1Chr18:3597323–3598404 (-)1.425e-11
Glyma.18G200500 hypothetical protein AT3G51860:CAX3:cation exchanger 3 1Chr18:48016361–48020799 (-)1.18e-11
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)2.491e-12
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)7.443e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.109e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4e-12
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)1.201e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)3.667e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.267e-13
Glyma.20G021600 PT12 AT1G20860:PHT1;8:phosphate transporter 1;8__AT1G76430:PHT1;9:phosphate transporter 1;9 1Chr20:2196534–2205616 (+)3.276e-13
Glyma.20G022000 hypothetical protein NA 1Chr20:2262949–2267229 (+)3.361e-13
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)2.064e-11