Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25099

Metabolite ID
P25099
Deionized mass
96.0207 Da
Average m/z
97.0278
Average RT
14.6165
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
50
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

50 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.336e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 2Chr03:169480–172727 (+)5.448e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)3.517e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.028e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.585e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.214e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.214e-11
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)6.8e-11
Glyma.03G001400 hypothetical protein AT2G38610:AT2G38610:RNA-binding KH domain-containing protein 1Chr03:160599–165525 (+)4.073e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.126e-14
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.224e-11
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)9.724e-12
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)4.931e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.794e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.028e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.028e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.028e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.028e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)4.141e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)6.326e-13
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)6.326e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.487e-13
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)9.878e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)2.434e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.413e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.413e-12
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)9.457e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)8.981e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)8.981e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.466e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.457e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)4.457e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.222e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.222e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.222e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.585e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)2.004e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.336e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.336e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.336e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.336e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.631e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)6.435e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.349e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.369e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.369e-12
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)5.698e-11
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)1.289e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.256e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.321e-13