Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25073

Metabolite ID
P25073
Deionized mass
743.2228 Da
Average m/z
744.2332
Average RT
14.6096
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
70
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

70 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.702e-12
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)1.812e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.277e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)5.662e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)5.662e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)5.662e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.142e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)7.256e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.692e-14
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)1.223e-11
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)5.319e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)5.319e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)2.063e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.803e-13
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)4.529e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.214e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)9.222e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)9.222e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)9.222e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)8.101e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.702e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.702e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)1.126e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.277e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.277e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.277e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.277e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.054e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)4.145e-14
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)8.212e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)2.753e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)2.753e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)5.662e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)5.662e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)5.662e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)5.662e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)5.662e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)3.238e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)6.415e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.16e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.16e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.16e-12
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)8.442e-13
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)4.167e-13
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)6.143e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.212e-12
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)2.545e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)3.806e-12
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)3.806e-12
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)9.474e-12
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)9.474e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)3.009e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)7.256e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.692e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.877e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.305e-11
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)3.155e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)1.707e-14
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)1.858e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)5.623e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)5.675e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)5.675e-13
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)1.906e-12
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)9.242e-11
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)9.242e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)1.611e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.232e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.232e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.211e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.331e-11