Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25049

Metabolite ID
P25049
Deionized mass
258.0682 Da
Average m/z
259.0760
Average RT
14.6019
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G161500 hypothetical protein NA 7Chr16:32076715–32092322 (-)1.11e-11
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 6Chr20:34757381–34771672 (+)5.312e-11
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)1.144e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)2.291e-17
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)5.468e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 3Chr16:30652378–30659548 (+)4.014e-14
Glyma.16G159100 hypothetical protein NA 3Chr16:31889835–31894662 (+)2.34e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 3Chr16:36806718–36809299 (+)3.208e-16
Glyma.01G166400 hypothetical protein AT4G36080:AT4G36080:phosphotransferases/inositol or phosphatidylinositol kinase 2Chr01:50404781–50436297 (-)9.66e-11
Glyma.08G114400 hypothetical protein AT4G25650:ACD1-LIKE:ACD1-like protein 2Chr08:8750828–8756629 (-)1.741e-12
Glyma.08G114500 hypothetical protein AT4G38500:AT4G38500:Sept9 (DUF616) 2Chr08:8757033–8762145 (+)1.741e-12
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 2Chr12:3949453–3957386 (-)5.142e-14
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)4.595e-13
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)4.591e-12
Glyma.01G166300 hypothetical protein AT3G51230:AT3G51230:chalcone-flavanone isomerase family protein 1Chr01:50402188–50404181 (+)9.66e-11
Glyma.01G166600 hypothetical protein AT2G18000:TAF14:TBP-associated factor 14 1Chr01:50443699–50446896 (-)9.659e-11
Glyma.02G063800 hypothetical protein AT2G39200:MLO12:Seven transmembrane MLO family protein 1Chr02:5720590–5724380 (+)6.438e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)5.158e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.149e-12
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)5.385e-11
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)3.176e-13
Glyma.03G033600 hypothetical protein AT3G60580:AT3G60580:C2H2-like zinc finger protein 1Chr03:3885839–3887777 (-)3.524e-11
Glyma.03G136100 hypothetical protein NA 1Chr03:35199503–35203392 (-)1.739e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.2e-11
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)2.851e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.383e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)5.468e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)5.468e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.78e-16
Glyma.08G113700 Ubiquitin-conjugating enzyme COP10 AT3G13550:FUS9:Ubiquitin-conjugating enzyme family protein 1Chr08:8723285–8726038 (-)9.19e-11
Glyma.08G113900 hypothetical protein AT3G13560:AT3G13560:O-Glycosyl hydrolases family 17 protein 1Chr08:8730526–8734718 (-)1.62e-11
Glyma.08G114000 hypothetical protein AT5G46430:AT5G46430:Ribosomal protein L32e 1Chr08:8737686–8739958 (+)1.069e-11
Glyma.08G114200 hypothetical protein AT4G08810:SUB1:calcium ion binding protein 1Chr08:8743328–8745667 (-)1.741e-12
Glyma.08G114600 hypothetical protein NA 1Chr08:8763388–8766206 (-)1.002e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)5.293e-12
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)3.627e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.036e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.47e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.202e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.434e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.433e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)4.192e-15
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)8.457e-11
Glyma.14G087700 hypothetical protein NA 1Chr14:7856127–7866458 (-)2.614e-12
Glyma.16G051900 hypothetical protein NA 1Chr16:5009359–5009660 (+)1.411e-13
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)2.881e-14
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)3.599e-11
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)5.402e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.385e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.017e-13
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)1.663e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)4.014e-14
Glyma.16G145500 hypothetical protein AT2G39200:MLO12:Seven transmembrane MLO family protein 1Chr16:30630177–30636253 (+)9.372e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)4.591e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)5.126e-12
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)6.08e-12
Glyma.16G161600 hypothetical protein AT1G71720:PDE338:Nucleic acid-binding proteins superfamily 1Chr16:32094568–32100669 (+)3.655e-11
Glyma.16G207800 hypothetical protein AT4G15093:LigB:catalytic LigB subunit of aromatic ring-opening dioxygenase family 1Chr16:36750028–36751833 (-)6.891e-12
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)8.313e-15
Glyma.16G208100 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36776806–36778169 (+)2.755e-11
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)1.078e-11
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)3.685e-12
Glyma.18G227400 hypothetical protein AT2G45720:AT2G45720:ARM repeat superfamily protein 1Chr18:51650951–51654636 (-)9.649e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)8.169e-13
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.09e-15
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)1.003e-13
Glyma.18G301600 hypothetical protein AT2G33490:AT2G33490:hydroxyproline-rich glycoprotein family protein 1Chr18:57939468–57945328 (+)2.343e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.335e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.335e-11
Glyma.19G194300 Dt1 AT5G03840:TFL1:PEBP (phosphatidylethanolamine-binding protein) family protein 1Chr19:45183357–45185175 (-)4.02e-12
Glyma.19G194500 hypothetical protein AT2G36270:ABI5:Basic-leucine zipper (bZIP) transcription factor family protein 1Chr19:45201612–45206816 (+)4.02e-12
Glyma.19G194800 hypothetical protein AT2G36250:FTSZ2-1:Tubulin/FtsZ family protein 1Chr19:45215929–45223182 (+)4.02e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)9.5e-11
Glyma.20G033600 hypothetical protein NA 1Chr20:4581093–4581402 (-)6.987e-12
Glyma.20G034000 hypothetical protein AT2G03060:AGL30:AGAMOUS-like 30 1Chr20:4655939–4664465 (-)4.688e-11
Glyma.20G104900 hypothetical protein NA 1Chr20:34706863–34713989 (-)5.312e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)5.495e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)4.442e-11