Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24802

Metabolite ID
P24802
Deionized mass
496.1049 Da
Average m/z
497.1110
Average RT
14.5243
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)2.282e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)9.47e-14
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)5.41e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)6.593e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)2.991e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)7.09e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)7.09e-14
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)6.964e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)3.107e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.661e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.661e-12
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)1.167e-11
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)6.294e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)4.313e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.59e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)3.206e-11
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)7.394e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.231e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.569e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.843e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.695e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.442e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)3.179e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.328e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)6.593e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)6.593e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)6.593e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)6.593e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.064e-15
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)5.29e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)5.29e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)8.539e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)4.31e-13
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)8.71e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)1.021e-12
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)9.85e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.862e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.1e-12
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)5.723e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)1.257e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.07e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.07e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)3.421e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)5.208e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.418e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.418e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.276e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.276e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.991e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.378e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.378e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.09e-14
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.709e-11
Glyma.13G180300 hypothetical protein NA 1Chr13:29378090–29379784 (-)6.577e-11
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)2.49e-12
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)3.373e-14
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)6.287e-12
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)6.287e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)3.264e-12
Glyma.14G198100 hypothetical protein NA 1Chr14:46337677–46340654 (+)5.225e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)8.594e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)9.259e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)5.27e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.505e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.314e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)4.852e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.23e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)9.554e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)7.811e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.027e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.027e-13
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.749e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)7.193e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)3.471e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.795e-13
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)1.197e-12
Glyma.20G106400 hypothetical protein AT5G23590:AT5G23590:DNAJ heat shock N-terminal domain-containing protein 1Chr20:34888699–34893605 (-)1.889e-13
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.147e-11