Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24644

Metabolite ID
P24644
Deionized mass
437.1525 Da
Average m/z
438.1580
Average RT
14.4817
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)1.994e-14
Glyma.13G224800 hypothetical protein NA 3Chr13:33748627–33756494 (-)5.555e-12
Glyma.06G090100 hypothetical protein NA 2Chr06:6985471–6996418 (+)6.003e-13
Glyma.09G052400 hypothetical protein AT1G31040:AT1G31040:PLATZ transcription factor family protein 2Chr09:4583416–4589291 (-)5.689e-15
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)3.657e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.009e-13
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 2Chr20:34151918–34155417 (+)1.88e-13
Glyma.02G176800 hypothetical protein AT5G06839:TGA10:bZIP transcription factor family protein 1Chr02:29019977–29028838 (-)4.605e-11
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)9.758e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.12e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.53e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.53e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.53e-12
Glyma.05G191600 hypothetical protein AT2G13680:CALS5:callose synthase 5 1Chr05:37711639–37726572 (-)1.632e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.776e-11
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)5.936e-11
Glyma.06G090200 hypothetical protein NA 1Chr06:6994887–6999658 (-)6.003e-13
Glyma.06G090300 hypothetical protein AT1G09980:AT1G09980:Putative serine esterase family protein__AT1G58350:ZW18:Putative serine esterase family protein 1Chr06:7005790–7019054 (+)6.003e-13
Glyma.06G090400 hypothetical protein AT5G49650:XK-2:xylulose kinase-2 1Chr06:7022045–7025738 (+)6.003e-13
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.104e-11
Glyma.09G052100 hypothetical protein AT3G22230:AT3G22230:Ribosomal L27e protein family 1Chr09:4536612–4538089 (+)4.758e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)2.303e-15
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)4.16e-14
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)4.16e-14
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.36e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.36e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.854e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.009e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.642e-11
Glyma.13G219300 hypothetical protein AT1G30190:AT1G30190:cotton fiber protein 1Chr13:33254523–33255542 (+)9.701e-13
Glyma.13G219700 hypothetical protein AT1G61280:AT1G61280:Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit__AT2G39445:AT2G39445:Phos… 1Chr13:33268846–33272890 (-)9.701e-13
Glyma.13G219900 hypothetical protein AT1G30210:TCP24:TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 1Chr13:33290348–33300721 (-)1.048e-12
Glyma.13G223900 hypothetical protein AT1G29690:CAD1:MAC/Perforin domain-containing protein 1Chr13:33672010–33679263 (-)5.317e-12
Glyma.13G224300 hypothetical protein NA 1Chr13:33703380–33715996 (-)5.555e-12
Glyma.13G224500 hypothetical protein AT1G29750:RKF1:receptor-like kinase in flowers 1 1Chr13:33725180–33735368 (+)8.591e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.833e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)9.639e-12
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)4.983e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.527e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.527e-14
Glyma.20G034000 hypothetical protein AT2G03060:AGL30:AGAMOUS-like 30 1Chr20:4655939–4664465 (-)6.66e-12
Glyma.20G098500 hypothetical protein AT2G39470:PnsL1:PsbP-like protein 2 1Chr20:34179794–34183432 (-)3.418e-11
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)2.316e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)4.194e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)1.437e-11