Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24621

Metabolite ID
P24621
Deionized mass
801.3942 Da
Average m/z
401.7061
Average RT
14.4740
Adduct
[M+2H]2+
Association scope
Overlapping genes only
Associated genes
39
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

39 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)2.355e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)1.268e-13
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)5.888e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)3.416e-14
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)5.301e-12
Glyma.05G210400 hypothetical protein AT5G41460:AT5G41460:transferring glycosyl group transferase (DUF604)__AT4G11350:AT4G11350:transferring glycosyl group t… 1Chr05:39235808–39239820 (-)3.337e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.125e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.485e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.572e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.572e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)7.613e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.968e-14
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)3.113e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)3.113e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)7.671e-11
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)8.441e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)2.931e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.688e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)1.215e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)5.384e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.242e-15
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)5.083e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.888e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)3.965e-12
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)4.613e-14
Glyma.10G137800 hypothetical protein AT4G01800:AGY1:Albino or Glassy Yellow 1 1Chr10:37158326–37170155 (+)6.92e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.347e-15
Glyma.12G202700 hypothetical protein AT2G20875:EPF1:epidermal patterning factor 1 1Chr12:36329374–36330905 (-)5.037e-11
Glyma.13G182200 hypothetical protein AT3G45100:SETH2:UDP-Glycosyltransferase superfamily protein 1Chr13:29529252–29533936 (+)3.993e-12
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)3.938e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)7.382e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)3.938e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)3.938e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.315e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.315e-11
Glyma.19G097300 hypothetical protein AT3G26890:AT3G26890:meiosis chromosome segregation family protein 1Chr19:34177996–34184886 (-)2.322e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)8.48e-12
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)5.934e-11
Glyma.20G222800 hypothetical protein AT3G04760:AT3G04760:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr20:45748122–45750353 (+)2.329e-12