Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24620

Metabolite ID
P24620
Deionized mass
193.1526 Da
Average m/z
194.1605
Average RT
14.4738
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
55
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

55 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.258e-13
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)6.8e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 2Chr03:169480–172727 (+)7.419e-11
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)5.962e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.967e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.967e-11
Glyma.02G107400 hypothetical protein NA 1Chr02:10245905–10246706 (-)2.595e-11
Glyma.02G138200 hypothetical protein NA 1Chr02:14307786–14310106 (-)5.476e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)8.094e-12
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)3.66e-14
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)3.66e-14
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)3.66e-14
Glyma.02G304500 hypothetical protein AT5G48300:ADG1:ADP glucose pyrophosphorylase 1 1Chr02:47950037–47954106 (+)9.039e-12
Glyma.03G002100 hypothetical protein AT5G01930:MAN6:Glycosyl hydrolase superfamily protein 1Chr03:211934–216522 (+)9.316e-11
Glyma.03G002400 hypothetical protein AT5G25780:EIF3B-2:eukaryotic translation initiation factor 3B-2 1Chr03:234217–238375 (-)9.316e-11
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)2.248e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)7.601e-13
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)5.293e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)6.715e-12
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)6.715e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.258e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.258e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.869e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.109e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)3.687e-11
Glyma.09G234200 hypothetical protein NA 1Chr09:45661404–45666997 (+)5.579e-13
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)7.326e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.347e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.347e-11
Glyma.13G031600 hypothetical protein NA 1Chr13:10243883–10250791 (+)8.705e-11
Glyma.13G031700 hypothetical protein NA 1Chr13:10255501–10258532 (-)8.705e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)4.538e-14
Glyma.13G193900 hypothetical protein NA 1Chr13:30714547–30714981 (-)3.886e-11
Glyma.13G200800 hypothetical protein AT2G21510:AT2G21510:DNAJ heat shock N-terminal domain-containing protein 1Chr13:31438634–31445721 (+)8.21e-11
Glyma.13G299200 hypothetical protein AT1G03600:PSB27:photosystem II family protein 1Chr13:39750734–39751715 (-)2.039e-12
Glyma.13G299900 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr13:39805231–39809052 (-)1.048e-12
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)5.5e-11
Glyma.14G063600 hypothetical protein AT5G05840:AT5G05840:replication factor C subunit, putative (DUF620) 1Chr14:5163603–5167769 (+)5.64e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.182e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)8.272e-11
Glyma.14G119800 hypothetical protein AT1G43850:SEU:SEUSS transcriptional co-regulator 1Chr14:16751592–16763348 (-)1.393e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.183e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.562e-13
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)5.466e-14
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)8.719e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)9.483e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.51e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)6.501e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)9.411e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.775e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)6.8e-12
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)2.718e-11
Glyma.18G039500 hypothetical protein AT5G37770:TCH2:EF hand calcium-binding protein family 1Chr18:3218263–3219353 (+)3.744e-12
Glyma.18G040000 GAI AT1G66350:RGL1:RGA-like 1__AT3G03450:RGL2:RGA-like 2 1Chr18:3278869–3281985 (-)5.267e-11
Glyma.18G268900 hypothetical protein AT3G02170:LNG2:longifolia2__AT5G15580:LNG1:longifolia1 1Chr18:55259873–55265930 (-)4.856e-12