Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24581

Metabolite ID
P24581
Deionized mass
789.2768 Da
Average m/z
790.2825
Average RT
14.4610
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.68e-13
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)2.789e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.795e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.795e-12
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 2Chr14:1009519–1014238 (+)2.001e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)9.52e-14
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)2.02e-12
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)8.637e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)9.295e-12
Glyma.03G036800 TBP1 AT3G13445:TBP1:TATA binding protein 1 1Chr03:4472672–4477787 (-)4.687e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.647e-11
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)8.568e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)1.135e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)3.146e-13
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)3.146e-13
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)3.146e-13
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.401e-13
Glyma.06G093300 hypothetical protein NA 1Chr06:7344696–7351172 (+)6.118e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.988e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.988e-15
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)5.444e-15
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.217e-14
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)5.578e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)2.857e-12
Glyma.07G067600 hypothetical protein NA 1Chr07:6091311–6093654 (-)8.722e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)1.316e-14
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)1.316e-14
Glyma.07G075400 hypothetical protein NA 1Chr07:6849233–6853058 (+)1.281e-12
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)1.338e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)3.326e-11
Glyma.07G096900 GmChl 2 AT1G19670:CLH1:chlorophyllase 1 1Chr07:9083837–9085839 (-)2.865e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)2.817e-15
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)3.459e-12
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)3.459e-12
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)6.642e-15
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)3.155e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)3.155e-11
Glyma.10G257500 hypothetical protein NA 1Chr10:48386988–48389180 (-)7.4e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)5.387e-12
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)8.628e-12
Glyma.10G266400 hypothetical protein NA 1Chr10:48984735–48993690 (+)2.985e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.772e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.772e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.087e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.087e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.484e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.484e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.795e-12
Glyma.13G142500 hypothetical protein NA 1Chr13:25548232–25550097 (+)8.803e-11
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)7.356e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.784e-12
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)2.905e-14
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)9.251e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.454e-14
Glyma.14G211800 hypothetical protein AT1G66080:AT1G66080:hikeshi-like protein 1Chr14:47664851–47670630 (+)6.386e-11
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)9.276e-11
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)5.023e-11
Glyma.18G251000 hypothetical protein NA 1Chr18:53738009–53740714 (+)3.084e-13
Glyma.18G251400 hypothetical protein NA 1Chr18:53754942–53759244 (-)1.833e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.181e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.861e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.861e-11