Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24572

Metabolite ID
P24572
Deionized mass
622.2276 Da
Average m/z
623.2373
Average RT
14.4572
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
110
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

110 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G217300 hypothetical protein AT2G25170:PKL:chromatin remodeling factor CHD3 (PICKLE) 6Chr17:36638143–36669455 (-)1.73e-11
Glyma.18G107900 hypothetical protein AT1G06490:CalS7:glucan synthase-like 7 4Chr18:12220182–12260477 (+)3.893e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)3.181e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 3Chr17:36510062–36519347 (+)3.881e-18
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)4.388e-13
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)3.065e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 2Chr05:41274513–41279615 (-)2.072e-18
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.451e-11
Glyma.13G198600 hypothetical protein AT3G07940:AT3G07940:Calcium-dependent ARF-type GTPase activating protein family 2Chr13:31233913–31240731 (-)2.09e-11
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 2Chr15:48661607–48665946 (-)1.708e-11
Glyma.17G208400 hypothetical protein NA 2Chr17:34184145–34222159 (-)1.116e-11
Glyma.17G211500 hypothetical protein AT4G32272:AT4G32272:Nucleotide/sugar transporter family protein 2Chr17:34916813–34922875 (+)8.664e-14
Glyma.17G217200 hypothetical protein AT4G31910:BAT1:HXXXD-type acyl-transferase family protein 2Chr17:36624152–36630712 (-)1.73e-11
Glyma.17G217600 hypothetical protein NA 2Chr17:36695797–36698982 (-)1.73e-11
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)7.276e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)4.506e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)5.973e-11
Glyma.02G294000 hypothetical protein NA 1Chr02:47237993–47240495 (+)3.595e-11
Glyma.02G294200 hypothetical protein AT3G20290:EHD1:EPS15 homology domain 1 1Chr02:47256480–47263517 (+)3.063e-13
Glyma.02G294500 hypothetical protein AT5G50850:MAB1:Transketolase family protein 1Chr02:47272683–47277831 (-)7.481e-12
Glyma.02G294900 hypothetical protein AT5G55220:AT5G55220:trigger factor type chaperone family protein 1Chr02:47300149–47306133 (+)6.88e-11
Glyma.02G295000 hypothetical protein AT4G26770:AT4G26770:Phosphatidate cytidylyltransferase family protein 1Chr02:47306160–47312036 (-)6.88e-11
Glyma.03G022300 hypothetical protein AT3G60880:DHDPS1:dihydrodipicolinate synthase 1 1Chr03:2331191–2334210 (-)7.977e-11
Glyma.03G022500 hypothetical protein NA 1Chr03:2339702–2345448 (+)1.909e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.681e-12
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)4.097e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.308e-11
Glyma.04G084600 hypothetical protein NA 1Chr04:7171949–7173688 (+)2.952e-11
Glyma.04G085400 hypothetical protein AT5G25840:AT5G25840:DUF1677 family protein (DUF1677) 1Chr04:7274320–7276634 (-)3.473e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)5.171e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.003e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.818e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)7.718e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)7.718e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.099e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.612e-16
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.612e-16
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.612e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.329e-25
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.551e-14
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.358e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)3.715e-11
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)3.316e-11
Glyma.06G190600 hypothetical protein NA 1Chr06:16718710–16723775 (-)2.906e-11
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)5.223e-11
Glyma.07G093700 hypothetical protein AT3G18290:BTS:zinc finger protein-like protein 1Chr07:8723740–8734056 (-)7.442e-12
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)3.326e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.451e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.451e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.451e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.451e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.707e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.161e-12
Glyma.09G169400 hypothetical protein NA 1Chr09:39398732–39401341 (-)3.641e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)4.119e-13
Glyma.09G187700 hypothetical protein AT3G24420:AT3G24420:alpha/beta-Hydrolases superfamily protein 1Chr09:41217358–41221592 (-)1.357e-16
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)2.923e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.661e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)7.558e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)3.27e-12
Glyma.10G274700 hypothetical protein AT1G68560:XYL1:alpha-xylosidase 1__AT3G45940:AT3G45940:Glycosyl hydrolases family 31 protein 1Chr10:49769554–49774168 (-)6.612e-15
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)8.096e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)8.997e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)8.997e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)8.997e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)8.998e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)2.626e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.816e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.816e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.506e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.93e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)3.181e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)2.501e-14
Glyma.13G186700 hypothetical protein AT5G13750:ZIFL1:zinc induced facilitator-like 1 1Chr13:30042541–30049047 (+)5.889e-11
Glyma.13G187100 hypothetical protein AT1G02100:SBI1:Leucine carboxyl methyltransferase 1Chr13:30076949–30095359 (-)1.087e-11
Glyma.13G189700 hypothetical protein AT5G07050:UMAMIT9:nodulin MtN21 /EamA-like transporter family protein 1Chr13:30310606–30315849 (-)3.285e-15
Glyma.13G197700 hypothetical protein AT5G38730:AT5G38730:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr13:31174654–31180595 (-)2.186e-16
Glyma.13G198800 hypothetical protein NA 1Chr13:31252110–31257733 (-)2.09e-11
Glyma.13G319700 hypothetical protein NA 1Chr13:41414504–41418957 (+)6.406e-11
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 1Chr14:1009519–1014238 (+)9.835e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.708e-11
Glyma.16G062500 hypothetical protein NA 1Chr16:6099546–6105267 (-)2.222e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.256e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.256e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)7.772e-11
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)3.823e-12
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)3.823e-12
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)3.823e-12
Glyma.17G207000 hypothetical protein NA 1Chr17:33925621–33935113 (+)1.116e-11
Glyma.17G208500 hypothetical protein NA 1Chr17:34224093–34230310 (-)1.116e-11
Glyma.17G209600 hypothetical protein AT2G25530:AT2G25530:AFG1-like ATPase family protein 1Chr17:34571688–34581787 (-)1.116e-11
Glyma.17G209700 hypothetical protein NA 1Chr17:34586468–34590309 (+)1.116e-11
Glyma.17G211600 hypothetical protein NA 1Chr17:34925097–34929797 (+)2.853e-14
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)7.366e-15
Glyma.17G215200 hypothetical protein NA 1Chr17:36125880–36142936 (+)3.416e-13
Glyma.17G215400 hypothetical protein NA 1Chr17:36163614–36164915 (+)1.342e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.127e-21
Glyma.17G217000 hypothetical protein NA 1Chr17:36553695–36556013 (+)1.73e-11
Glyma.17G217100 hypothetical protein NA 1Chr17:36599289–36605544 (+)1.73e-11
Glyma.17G217800 hypothetical protein NA 1Chr17:36740653–36743352 (-)1.73e-11
Glyma.17G218400 hypothetical protein NA 1Chr17:36900654–36906204 (+)3.287e-12
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)1.17e-11
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)4.819e-12
Glyma.18G107500 hypothetical protein NA 1Chr18:12116972–12118952 (+)3.133e-11
Glyma.18G107800 hypothetical protein AT1G06500:AT1G06500:uncharacterized protein 1Chr18:12208710–12212011 (-)9.159e-11
Glyma.18G108000 hypothetical protein NA 1Chr18:12221736–12225257 (-)9.162e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)1.972e-12
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)8.711e-12
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)8.712e-12
Glyma.20G217700 hypothetical protein AT1G32810:AT1G32810:RING/FYVE/PHD zinc finger superfamily protein 1Chr20:45347424–45357977 (-)2.627e-11