Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24490

Metabolite ID
P24490
Deionized mass
538.3164 Da
Average m/z
539.3259
Average RT
14.4296
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
38
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

38 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)5.808e-12
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 2Chr14:6037810–6041899 (+)5.314e-13
Glyma.02G115900 hypothetical protein AT1G26480:GRF12:ral regulatory factor 12 1Chr02:11280858–11285984 (+)1.263e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.69e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.798e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.558e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.021e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.135e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.873e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)5.207e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.165e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.628e-16
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.646e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.646e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.646e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.646e-13
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)9.915e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.036e-13
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)9.915e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.793e-15
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)3.568e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)3.568e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)3.568e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)3.912e-13
Glyma.13G068200 hypothetical protein AT5G14940:AT5G14940:Major facilitator superfamily protein 1Chr13:16825383–16836935 (+)3.364e-11
Glyma.13G202000 hypothetical protein NA 1Chr13:31566728–31571708 (-)9.441e-12
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)7.65e-12
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)5.314e-13
Glyma.14G071900 hypothetical protein AT1G19650:AT1G19650:Sec14p-like phosphatidylinositol transfer family protein__AT1G75370:AT1G75370:Sec14p-like phosphati… 1Chr14:6043655–6049030 (+)1.804e-11
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)1.945e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.046e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.127e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.555e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.773e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.773e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.014e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.014e-14
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)8.015e-11