Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24445

Metabolite ID
P24445
Deionized mass
712.2079 Da
Average m/z
713.2204
Average RT
14.4175
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
137
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

137 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.29e-17
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)8.3e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.766e-11
Glyma.04G129500 hypothetical protein AT3G21060:RBL:Transducin/WD40 repeat-like superfamily protein 2Chr04:18096368–18109438 (+)5.359e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)7.428e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)7.429e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)7.428e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)2.404e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)5.938e-16
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)5.338e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.635e-16
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.298e-12
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 2Chr18:57674222–57678396 (+)8.886e-14
Glyma.19G009000 hypothetical protein AT5G14780:FDH:formate dehydrogenase 2Chr19:860974–865476 (+)2.283e-14
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)5.349e-20
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)3.311e-16
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)2.275e-19
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)2.275e-19
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)8.3e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.536e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.536e-13
Glyma.02G081600 hypothetical protein NA 1Chr02:7054190–7055955 (-)7.466e-13
Glyma.02G081900 hypothetical protein AT1G43650:UMAMIT22:nodulin MtN21 /EamA-like transporter family protein 1Chr02:7075646–7080163 (-)3.815e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)1.425e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)1.425e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)1.425e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)1.678e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.992e-13
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)2.074e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)8.757e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.516e-13
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.653e-15
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)4.002e-17
Glyma.04G124600 hypothetical protein NA 1Chr04:16329983–16332898 (-)3.419e-11
Glyma.04G129600 hypothetical protein NA 1Chr04:18110585–18112762 (+)5.359e-11
Glyma.04G158400 hypothetical protein AT3G42660:AT3G42660:transducin family protein / WD-40 repeat family protein 1Chr04:38560905–38571145 (-)6.072e-11
Glyma.04G160700 hypothetical protein AT1G18610:AT1G18610:Galactose oxidase/kelch repeat superfamily protein 1Chr04:39818871–39825716 (+)6.072e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.753e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.602e-16
Glyma.06G175200 SEOd NA 1Chr06:14822478–14829186 (-)1.269e-11
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)8.629e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)5.598e-14
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)1.563e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)1.563e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)5.391e-11
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)5.724e-11
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)7.054e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)7.054e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)2.695e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)2.695e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)7.054e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)9.545e-12
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)9.271e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)2.742e-13
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)5.364e-15
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.448e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)6.219e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)6.528e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)1.438e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.715e-14
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)7.429e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)7.429e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)7.429e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)7.71e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)7.427e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)7.427e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)5.236e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)5.451e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)1.35e-12
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)1.736e-13
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 1Chr11:15087390–15090683 (-)8.349e-13
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.288e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.287e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.814e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.814e-13
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)2.097e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.076e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.076e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)6.347e-14
Glyma.13G201300 hypothetical protein NA 1Chr13:31497499–31499001 (+)7.762e-11
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)8.055e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)4.486e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)4.323e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)2.812e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)3.355e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.315e-15
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)1.451e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)1.451e-11
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)9.727e-11
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)9.727e-11
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)9.727e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.635e-16
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)8.058e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.449e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.642e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.449e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.449e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)9.139e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.989e-13
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)6.583e-12
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)6.583e-12
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)2.755e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)3.072e-11
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)4.613e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)4.044e-13
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)1.859e-11
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)2.884e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)1.055e-11
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)4.881e-11
Glyma.16G063600 hypothetical protein NA 1Chr16:6255512–6260421 (+)6.521e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.766e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.766e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.766e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.766e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.291e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.203e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.33e-13
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)2.64e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)3.166e-12
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)2.565e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.944e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.379e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.379e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)4.175e-12
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)1.856e-11
Glyma.18G197500 hypothetical protein NA 1Chr18:47377826–47380850 (+)3.441e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)5.693e-14
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)1.251e-12
Glyma.19G009900 hypothetical protein NA 1Chr19:923053–937826 (-)2.839e-13
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)5.349e-20
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.166e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.545e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.041e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.427e-13
Glyma.20G099900 hypothetical protein AT5G23390:AT5G23390:polygalacturonase inhibitor (DUF639) 1Chr20:34312783–34318966 (+)3.951e-14
Glyma.20G100000 Thioredoxin-like fold domain-containing protein MRL7L, chloroplastic AT2G31840:MRL7-L:Thioredoxin superfamily protein 1Chr20:34320945–34324107 (+)4.029e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)6.362e-11