Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24368

Metabolite ID
P24368
Deionized mass
493.1760 Da
Average m/z
494.1797
Average RT
14.3977
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)1.139e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)2.874e-19
Glyma.06G201700 hypothetical protein NA 2Chr06:18577883–18617874 (+)7.47e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.395e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.196e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)3.674e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)4.103e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)7.317e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)8.926e-12
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)8.893e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)6.78e-16
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.815e-15
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)1.018e-11
Glyma.06G145300 hypothetical protein AT5G05340:PRX52:Peroxidase superfamily protein 1Chr06:11849535–11851671 (+)9.55e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)5.206e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)7.258e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)6.114e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)4.744e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)3.422e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)9.188e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)3.481e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)1.012e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.304e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.305e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.184e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.184e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.748e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.575e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.31e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.022e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.31e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.31e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.832e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.235e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.629e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)6.727e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)9.726e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.512e-14
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)3.901e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)3.901e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.616e-16
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)2.482e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)1.016e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)2.184e-11
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)5.867e-11
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)6.098e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)7.76e-13