Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24352

Metabolite ID
P24352
Deionized mass
245.1326 Da
Average m/z
246.1406
Average RT
14.3948
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
43
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

43 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.247e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)2.328e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)2.1e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.715e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.984e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)8.172e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)8.172e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.515e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.668e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.668e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.668e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.247e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.247e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)4.583e-11
Glyma.07G243600 hypothetical protein NA 1Chr07:42336266–42345196 (+)4.056e-11
Glyma.09G177400 hypothetical protein NA 1Chr09:40183616–40184826 (-)1.404e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.017e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.095e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.532e-14
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.335e-13
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.335e-13
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.335e-13
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.335e-13
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)5.459e-12
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)8.378e-13
Glyma.11G241400 hypothetical protein AT4G40000:AT4G40000:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr11:33556332–33563163 (-)3.115e-11
Glyma.11G241900 hypothetical protein NA 1Chr11:33589346–33594428 (-)3.115e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.154e-14
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)8.701e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)4.995e-11
Glyma.16G219000 hypothetical protein NA 1Chr16:37634112–37638596 (-)8.01e-11
Glyma.17G218900 hypothetical protein AT5G26150:AT5G26150:protein kinase family protein 1Chr17:37041468–37047674 (+)7.13e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.23e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.229e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)3.922e-12
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)3.916e-12
Glyma.20G107900 hypothetical protein NA 1Chr20:35044042–35046452 (-)9.27e-12
Glyma.20G108000 hypothetical protein NA 1Chr20:35047833–35051623 (-)3.35e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)3.146e-11
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)9.287e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)3.829e-13
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)3.303e-14
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)3.915e-13