Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24315

Metabolite ID
P24315
Deionized mass
304.2249 Da
Average m/z
305.2318
Average RT
14.3830
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
73
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

73 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)3.987e-13
Glyma.03G133000 hypothetical protein AT3G10140:RECA3:RECA homolog 3 2Chr03:34790211–34802509 (-)4.124e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)1.074e-13
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)3.963e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)6.2e-11
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)4.704e-18
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)6.591e-13
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)9.976e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)1.806e-13
Glyma.01G045600 hypothetical protein NA 1Chr01:5242432–5245038 (-)7.35e-11
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)5.703e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)4.706e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)9.296e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)7.935e-15
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.916e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.847e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)5.155e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)7.36e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.935e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.974e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.431e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)7.158e-11
Glyma.06G175200 SEOd NA 1Chr06:14822478–14829186 (-)9.307e-13
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 1Chr07:6169729–6172231 (+)4.479e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)6.173e-11
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)9.677e-12
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)9.677e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)6.2e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)6.199e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)3.964e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)6.2e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)6.921e-11
Glyma.08G182400 hypothetical protein NA 1Chr08:14625596–14626713 (+)3.317e-13
Glyma.09G237900 hypothetical protein NA 1Chr09:45960580–45964267 (+)5.791e-12
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)1.381e-13
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)6.773e-15
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)3.552e-14
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)6.765e-12
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)2.283e-11
Glyma.09G252400 hypothetical protein NA 1Chr09:47260143–47260334 (+)2.283e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)1.785e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)3.986e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)8.337e-17
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)8.337e-17
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)8.337e-17
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)8.337e-17
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)1.033e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)9.222e-17
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)1.033e-11
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)6.502e-12
Glyma.11G000700 hypothetical protein AT4G34150:AT4G34150:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr11:33497–35198 (+)3.47e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)5.164e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.468e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.468e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.468e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)3.652e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.687e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.655e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.687e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.687e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.262e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.197e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.142e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)9.025e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.08e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.08e-11
Glyma.17G118900 hypothetical protein NA 1Chr17:9401882–9402864 (+)4.933e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.327e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)9.976e-12
Glyma.17G218400 hypothetical protein NA 1Chr17:36900654–36906204 (+)4.948e-12
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)5.653e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)9.684e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.706e-11