Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24269

Metabolite ID
P24269
Deionized mass
592.2143 Da
Average m/z
593.2208
Average RT
14.3675
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
76
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

76 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)9.029e-14
Glyma.03G022900 hypothetical protein NA 2Chr03:2409690–2420328 (-)1.524e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)2.872e-14
Glyma.04G086600 hypothetical protein NA 2Chr04:7374806–7380808 (+)1.096e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)2.172e-12
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)1.029e-11
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)1.029e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)9.215e-15
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.184e-18
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)3.067e-14
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)5.544e-18
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)7.322e-17
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)6.555e-15
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)6.555e-15
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)6.555e-15
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)6.555e-15
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)6.555e-15
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)6.555e-15
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)6.555e-15
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)9.029e-14
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)3.677e-13
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.284e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.285e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.021e-16
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)3.578e-14
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)9.358e-15
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.138e-15
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)8.192e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.109e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)1.352e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.135e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.408e-12
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)1.717e-11
Glyma.06G317900 hypothetical protein AT5G51400:AT5G51400:PLAC8 family protein 1Chr06:50645095–50649256 (+)5.004e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)1.055e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.114e-13
Glyma.08G199700 hypothetical protein AT5G50340:AT5G50340:DNA repair protein RadA-like protein 1Chr08:16130591–16137703 (+)9.903e-11
Glyma.08G199800 hypothetical protein NA 1Chr08:16137933–16142956 (-)9.903e-11
Glyma.08G199900 hypothetical protein AT3G16480:MPPalpha:mitochondrial processing peptidase alpha subunit 1Chr08:16146033–16151741 (+)9.903e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)8.945e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.115e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.328e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.325e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.325e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.325e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.325e-12
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)3.974e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.454e-13
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)3.974e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.715e-14
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)5.705e-15
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)2.132e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)4.111e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)4.111e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)4.111e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)4.111e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)8.522e-13
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)8.522e-13
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)8.522e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)8.857e-15
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)8.857e-15
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.924e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)3.924e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)3.924e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)3.382e-14
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)1.364e-13
Glyma.13G185300 hypothetical protein AT5G04990:SUN1:SAD1/UNC-84 domain protein 1__AT3G10730:SUN2:SAD1/UNC-84 domain protein 2 1Chr13:29926876–29931324 (+)4.014e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.215e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.767e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)2.331e-12
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)1.604e-11
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)9.115e-12
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)1.68e-11
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)5.924e-12
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)4.405e-13
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)3.182e-11