Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24265

Metabolite ID
P24265
Deionized mass
417.1166 Da
Average m/z
418.1246
Average RT
14.3660
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
51
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

51 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)8.784e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.784e-13
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)2.761e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)3.416e-11
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)6.137e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.365e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)3.819e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.868e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.064e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.054e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.921e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)3.145e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)3.675e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)8.784e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.784e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.784e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.598e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.695e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.695e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.695e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.695e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.015e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)7.651e-15
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)3.847e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.664e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.315e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.315e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.315e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.315e-12
Glyma.11G062400 hypothetical protein AT4G36860:AT4G36860:LIM domain-containing protein 1Chr11:4720040–4726569 (+)7.894e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.172e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.172e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.172e-11
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)2.585e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.416e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.311e-13
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)7.311e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)7.311e-13
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)1.05e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)6.755e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)9.965e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)6.755e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)6.755e-13
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)6.069e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)6.069e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)9.196e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)5.54e-12
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)9.85e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.947e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.946e-13
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)7.384e-11