Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24264

Metabolite ID
P24264
Deionized mass
556.2047 Da
Average m/z
557.2086
Average RT
14.3658
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
68
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

68 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G226300 hypothetical protein NA 5Chr18:51471540–51498344 (+)4.499e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)3.518e-11
Glyma.06G040400 hypothetical protein NA 2Chr06:3041657–3047267 (+)1.853e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.266e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.4e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)1.339e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)5.492e-12
Glyma.01G153300 hypothetical protein AT5G45340:CYP707A3:cytochrome P450, family 707, subfamily A, polypeptide 3__AT4G19230:CYP707A1:cytochrome P450, family … 1Chr01:49049375–49052359 (-)5.955e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.517e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)3.303e-11
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)1.107e-11
Glyma.02G138200 hypothetical protein NA 1Chr02:14307786–14310106 (-)5.322e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.249e-11
Glyma.03G035800 hypothetical protein NA 1Chr03:4317466–4321009 (+)2.356e-11
Glyma.03G145700 hypothetical protein AT3G58030:AT3G58030:RING/U-box superfamily protein 1Chr03:36109689–36112241 (+)1.564e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)2.077e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.86e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.507e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.07e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.142e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.142e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.142e-12
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)1.764e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)5.091e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.126e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.082e-11
Glyma.06G037300 hypothetical protein AT2G26540:HEMD:uroporphyrinogen-III synthase family protein 1Chr06:2861369–2870869 (-)1.042e-12
Glyma.06G037800 hypothetical protein NA 1Chr06:2894530–2896325 (-)7.284e-11
Glyma.06G038700 hypothetical protein AT4G33360:FLDH:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:2935243–2937127 (+)9.508e-11
Glyma.06G040600 hypothetical protein AT5G42920:THO5:THO complex, subunit 5 1Chr06:3047742–3054708 (-)8.163e-11
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)4.925e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)4.91e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.518e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.518e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)6.765e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)6.765e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.266e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.266e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.266e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.266e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.733e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.679e-12
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)3.156e-12
Glyma.09G187700 hypothetical protein AT3G24420:AT3G24420:alpha/beta-Hydrolases superfamily protein 1Chr09:41217358–41221592 (-)9.024e-14
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)1.048e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.137e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)1.452e-12
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)9.559e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.845e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.417e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.417e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)1.672e-11
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)5.743e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.944e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.944e-13
Glyma.12G202700 hypothetical protein AT2G20875:EPF1:epidermal patterning factor 1 1Chr12:36329374–36330905 (-)8.794e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.651e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.287e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.287e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)8.248e-11
Glyma.17G112200 hypothetical protein AT5G52580:AT5G52580:RabGAP/TBC domain-containing protein 1Chr17:8837513–8848411 (+)3.541e-12
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)2.129e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)2.721e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)2.129e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)2.129e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)5.125e-13
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)2.853e-11
Glyma.20G219100 hypothetical protein AT3G02830:ZFN1:zinc finger protein 1 1Chr20:45490419–45496014 (+)4.82e-11