Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24220

Metabolite ID
P24220
Deionized mass
452.1801 Da
Average m/z
453.1889
Average RT
14.3543
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
139
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

139 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)4.048e-13
Glyma.20G106300 hypothetical protein AT2G16950:TRN1:transportin 1 3Chr20:34868954–34885305 (-)9.107e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)1.676e-15
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)4.146e-13
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.082e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.082e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.082e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)2.337e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)6.508e-13
Glyma.14G176900 SGF14K 14-3-3 protein SGF14k AT1G78300:GRF2:ral regulatory factor 2 2Chr14:43637893–43642553 (+)5.32e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)2.685e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)4.313e-12
Glyma.20G021900 hypothetical protein AT5G37340:AT5G37340:ZPR1 zinc-finger domain protein 2Chr20:2227480–2247807 (+)3.438e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)7.106e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.522e-13
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)1.952e-11
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)2.89e-15
Glyma.02G116600 hypothetical protein AT1G13770:RUS3:root UVB sensitive protein (Protein of unknown function, DUF647) 1Chr02:11357006–11362220 (-)2.919e-12
Glyma.02G116700 hypothetical protein AT1G68980:AT1G68980:Tetratricopeptide repeat (TPR)-like superfamily protein__AT1G69290:AT1G69290:Pentatricopeptide repe… 1Chr02:11375844–11381371 (+)2.919e-12
Glyma.02G116800 hypothetical protein NA 1Chr02:11389946–11393074 (+)2.919e-12
Glyma.02G117100 hypothetical protein AT2G03620:MGT3:magnesium transporter 3 1Chr02:11400594–11409016 (-)2.919e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.16e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)7.647e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.934e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.078e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)1.638e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.074e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)4.415e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.411e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)9.557e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.548e-12
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)5.003e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)1.83e-11
Glyma.06G133700 Pyridoxal reductase, chloroplastic AT5G53580:PLR1:NAD(P)-linked oxidoreductase superfamily protein 1Chr06:10995438–10999422 (-)4.439e-14
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)2.192e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.22e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)5.816e-11
Glyma.07G080900 hypothetical protein NA 1Chr07:7381339–7405785 (+)8.017e-11
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)2.142e-11
Glyma.09G011600 hypothetical protein NA 1Chr09:891635–893300 (+)9.798e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)4.859e-11
Glyma.09G065900 hypothetical protein NA 1Chr09:6419980–6421918 (+)2.791e-11
Glyma.09G066000 hypothetical protein NA 1Chr09:6431656–6439981 (-)2.791e-11
Glyma.09G066200 hypothetical protein AT5G57030:LUT2:Lycopene beta/epsilon cyclase protein 1Chr09:6475361–6486120 (+)2.791e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.706e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)5.621e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)2.435e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)9.576e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.082e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.082e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.082e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.082e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.082e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)9.719e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.813e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.813e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.813e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.813e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.329e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.532e-13
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)3.765e-11
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)1.681e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.122e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)5.34e-14
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)5.34e-14
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)5.34e-14
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)5.34e-14
Glyma.11G061800 hypothetical protein NA 1Chr11:4632831–4633552 (+)9.026e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)5.736e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)9.865e-13
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)9.864e-13
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)9.865e-13
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)2.455e-11
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)4.465e-14
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)1.033e-12
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)3.775e-15
Glyma.11G241400 hypothetical protein AT4G40000:AT4G40000:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr11:33556332–33563163 (-)2.004e-12
Glyma.11G241900 hypothetical protein NA 1Chr11:33589346–33594428 (-)2.004e-12
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)3.5e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.064e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.064e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.831e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)2.934e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.563e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)3.563e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)8.792e-17
Glyma.13G156200 hypothetical protein AT1G80710:DRS1:DROUGHT SENSITIVE 1 1Chr13:27115515–27118951 (+)1.146e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)1.328e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)5.272e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)5.272e-11
Glyma.15G108100 hypothetical protein NA 1Chr15:8500878–8505582 (-)9.116e-12
Glyma.15G108400 hypothetical protein AT1G11840:GLX1:glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein 1Chr15:8534420–8539477 (-)5.464e-11
Glyma.15G108500 hypothetical protein NA 1Chr15:8535758–8538465 (+)5.464e-11
Glyma.15G110200 hypothetical protein NA 1Chr15:8634006–8639001 (-)2.782e-12
Glyma.15G111000 hypothetical protein AT1G62305:AT1G62305:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein__AT1G11940:AT1G11940:Cor… 1Chr15:8692505–8697919 (-)2.506e-12
Glyma.15G111200 hypothetical protein AT1G11950:AT1G11950:Transcription factor jumonji (jmjC) domain-containing protein 1Chr15:8705907–8710609 (-)9.015e-12
Glyma.15G111900 hypothetical protein NA 1Chr15:8769366–8777275 (-)1.781e-11
Glyma.15G112100 hypothetical protein AT4G04180:AT4G04180:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr15:8796403–8805644 (-)1.781e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.697e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.768e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)6.615e-12
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)6.615e-12
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)3.177e-12
Glyma.16G013900 hypothetical protein AT1G17290:AlaAT1:alanine aminotransferas 1Chr16:1208240–1214310 (-)9.872e-13
Glyma.16G014100 hypothetical protein AT1G53830:PME2:pectin methylesterase 2 1Chr16:1222829–1228462 (-)9.872e-13
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)1.411e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)2.471e-14
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)2.937e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)4.883e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)3.66e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)5.012e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)8.959e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)8.959e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.801e-13
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)6.101e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)6.101e-11
Glyma.16G180200 hypothetical protein NA 1Chr16:34077613–34081734 (+)4.478e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.302e-14
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)4.399e-15
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.36e-11
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)4.377e-12
Glyma.18G006800 hypothetical protein AT1G67370:ASY1:DNA-binding HORMA family protein 1Chr18:495989–502111 (-)6.316e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)4.782e-11
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)7.165e-11
Glyma.18G273000 hypothetical protein NA 1Chr18:55575628–55582063 (-)2.407e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)7.14e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.232e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.195e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.429e-13
Glyma.20G021600 PT12 AT1G20860:PHT1;8:phosphate transporter 1;8__AT1G76430:PHT1;9:phosphate transporter 1;9 1Chr20:2196534–2205616 (+)8.707e-12
Glyma.20G022000 hypothetical protein NA 1Chr20:2262949–2267229 (+)3.438e-11
Glyma.20G105400 hypothetical protein AT2G17010:AT2G17010:Mechanosensitive ion channel family protein 1Chr20:34796301–34808587 (+)8.285e-11
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)2.227e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)2.579e-14
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)1.53e-16
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)2.442e-14
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)9.716e-15
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)3.811e-13
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)2.676e-14