Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24105

Metabolite ID
P24105
Deionized mass
888.2770 Da
Average m/z
889.2799
Average RT
14.3155
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
40
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

40 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)1.92e-14
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 2Chr10:40628401–40633140 (-)1.838e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)4.92e-13
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)6.183e-14
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)1.118e-14
Glyma.01G047300 hypothetical protein AT1G27090:AT1G27090:glycine-rich protein 1Chr01:5514127–5517339 (+)4.726e-14
Glyma.01G047500 hypothetical protein NA 1Chr01:5528742–5532260 (-)4.726e-14
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)6.759e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.29e-11
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)9.46e-11
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)9.46e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)4.592e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.601e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)7.412e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)7.412e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)2.623e-13
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.58e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)9.889e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)9.889e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)9.889e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)9.889e-12
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)2.962e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.273e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.273e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)4.624e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)3.583e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.394e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.28e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.28e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.28e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.107e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.935e-11
Glyma.16G024600 hypothetical protein AT1G01320:AT1G01320:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:2374161–2391216 (-)3.08e-11
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)1.217e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)2.604e-14
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)2.604e-14
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.704e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.018e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.018e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.229e-11