Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24097

Metabolite ID
P24097
Deionized mass
612.1467 Da
Average m/z
613.1523
Average RT
14.3133
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G226300 hypothetical protein NA 9Chr18:51471540–51498344 (+)1.881e-13
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)2.569e-13
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)5.228e-12
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)2.409e-12
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)3.92e-11
Glyma.01G153300 hypothetical protein AT5G45340:CYP707A3:cytochrome P450, family 707, subfamily A, polypeptide 3__AT4G19230:CYP707A1:cytochrome P450, family … 1Chr01:49049375–49052359 (-)3.181e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.662e-12
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)1.505e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)2.469e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)8.657e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.626e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.469e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.497e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.071e-12
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)2.293e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)4.925e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)5.805e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)4.294e-13
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)2.418e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)2.419e-11
Glyma.09G231600 hypothetical protein AT1G71692:AGL12:AGAMOUS-like 12 1Chr09:45485256–45489213 (+)3.571e-14
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.675e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)6.192e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.084e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)6.232e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.094e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)6.232e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)6.232e-13
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.893e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.949e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)3.949e-11
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)6.746e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)8.348e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)5.037e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)2.242e-14
Glyma.18G231300 hypothetical protein AT3G61310:AT3G61310:AT hook motif DNA-binding family protein 1Chr18:51979095–51987062 (-)3.409e-11
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)2.566e-12
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)9.797e-12
Glyma.18G284600 hypothetical protein AT1G24280:G6PD3:glucose-6-phosphate dehydrogenase 3__AT5G13110:G6PD2:glucose-6-phosphate dehydrogenase 2 1Chr18:56525770–56534088 (+)5.762e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)9.113e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)6.171e-11
Glyma.20G228200 hypothetical protein NA 1Chr20:46272887–46275642 (+)8.364e-11