Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P23946

Metabolite ID
P23946
Deionized mass
249.1325 Da
Average m/z
250.1414
Average RT
14.2696
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
153
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

153 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)7.202e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 4Chr20:34984922–34988496 (+)4.73e-14
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)7.654e-12
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)4.614e-11
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)4.282e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.146e-16
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.079e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)6.82e-11
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 2Chr02:693193–700260 (+)1.08e-13
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 2Chr05:41022747–41030067 (-)1.122e-16
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)3.995e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)3.995e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)3.995e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)5.819e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)9.204e-12
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)1.051e-13
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)8.864e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)6.081e-11
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)3.114e-12
Glyma.01G047300 hypothetical protein AT1G27090:AT1G27090:glycine-rich protein 1Chr01:5514127–5517339 (+)3.92e-11
Glyma.01G047500 hypothetical protein NA 1Chr01:5528742–5532260 (-)3.92e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.805e-12
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)2.91e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.88e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)5.882e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.695e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.406e-11
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)2.93e-12
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)2.93e-12
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)2.686e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.59e-13
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)2.72e-12
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)2.72e-12
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)2.72e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)9.945e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.365e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.365e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.859e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.084e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.084e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.084e-14
Glyma.05G188500 hypothetical protein AT3G27740:CARA:carbamoyl phosphate synthetase A 1Chr05:37445235–37448125 (+)7.037e-12
Glyma.05G191600 hypothetical protein AT2G13680:CALS5:callose synthase 5 1Chr05:37711639–37726572 (-)4.775e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)1.278e-16
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)1.122e-16
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)1.122e-16
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)1.122e-16
Glyma.05G233700 COL11 zinc finger protein CONSTANS-LIKE 16-like AT1G68520:BBX14:B-box type zinc finger protein with CCT domain-containing protein 1Chr05:41087671–41089500 (+)2.576e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.699e-18
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.832e-19
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.977e-15
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)2.386e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)2.386e-11
Glyma.06G121000 hypothetical protein NA 1Chr06:9848464–9850191 (-)9.976e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)4.565e-11
Glyma.06G175200 SEOd NA 1Chr06:14822478–14829186 (-)6.929e-11
Glyma.06G301100 hypothetical protein AT2G16030:AT2G16030:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr06:49013527–49014231 (+)6.659e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)8.312e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)8.312e-11
Glyma.06G307900 hypothetical protein NA 1Chr06:49664901–49674729 (+)3.985e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)9.138e-12
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)9.136e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.168e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)2.761e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)2.761e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.597e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.364e-13
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)4.614e-11
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)4.614e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.896e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)3.465e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)8.784e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)2.571e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)4.88e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)5.105e-13
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)3.995e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)3.995e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)3.995e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)3.995e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)3.995e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)8.359e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.459e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.459e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.459e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.459e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.697e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.411e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.19e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.189e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.19e-11
Glyma.12G098000 hypothetical protein NA 1Chr12:8432078–8439545 (+)6.737e-12
Glyma.12G098200 hypothetical protein AT2G32480:ARASP:chloroplastic membrane metallo proteases__AT1G05140:AT1G05140:Peptidase M50 family protein 1Chr12:8452063–8456493 (+)1.489e-11
Glyma.12G098300 hypothetical protein NA 1Chr12:8458112–8459817 (+)6.737e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.197e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.198e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.183e-16
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.183e-16
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.967e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)3.967e-11
Glyma.13G050500 hypothetical protein NA 1Chr13:14674243–14683099 (-)6.26e-11
Glyma.13G183400 hypothetical protein NA 1Chr13:29666942–29670201 (+)5.537e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)3.995e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.071e-14
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.071e-14
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.071e-14
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)5.441e-15
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)1.786e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)2.207e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)2.207e-11
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)3.3e-12
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)2.783e-13
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)2.783e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)3.101e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)9.204e-12
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)3.896e-11
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)3.896e-11
Glyma.15G048200 hypothetical protein AT1G25260:AT1G25260:Ribosomal protein L10 family protein 1Chr15:3812816–3815263 (+)7.292e-11
Glyma.15G049800 hypothetical protein NA 1Chr15:3927843–3933656 (-)7.723e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)3.002e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)3.002e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.102e-18
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.075e-15
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)6.528e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)6.323e-12
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)4.744e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)2.157e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)8.207e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.079e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.079e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.132e-16
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.178e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)4.718e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)1.293e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)9.405e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)6.82e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.446e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.446e-12
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)7.648e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.694e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)1.029e-11
Glyma.18G052100 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr18:4503897–4512049 (+)2.442e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.075e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.075e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.02e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.223e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.347e-13
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)3.164e-11
Glyma.20G107900 hypothetical protein NA 1Chr20:35044042–35046452 (-)3.784e-11
Glyma.20G108000 hypothetical protein NA 1Chr20:35047833–35051623 (-)5.545e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)1.832e-13
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)4.198e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.764e-15
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)1.64e-13