Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P23919

Metabolite ID
P23919
Deionized mass
407.2177 Da
Average m/z
408.2278
Average RT
14.2606
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
34
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

34 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G064500 hypothetical protein NA 2Chr04:5367346–5372857 (+)2.813e-11
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)3.288e-13
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)3.094e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.175e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.288e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.613e-12
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)1.209e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.202e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.055e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.409e-13
Glyma.06G209300 hypothetical protein NA 1Chr06:20573671–20581076 (-)5.048e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)9.362e-11
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)1.292e-13
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)1.292e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.175e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.175e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.175e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.175e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.179e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)5.622e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.021e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.961e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)8.807e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.179e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)8.377e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)6.606e-12
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.885e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)4.728e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.249e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.249e-11
Glyma.19G247800 hypothetical protein NA 1Chr19:49385792–49388122 (-)8.529e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.118e-11
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)4.746e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.434e-11