Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P23880

Metabolite ID
P23880
Deionized mass
711.2665 Da
Average m/z
712.2717
Average RT
14.2434
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.02G081600 hypothetical protein NA 2Chr02:7054190–7055955 (-)2.061e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.545e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.505e-12
Glyma.15G263500 hypothetical protein AT1G79440:ALDH5F1:aldehyde dehydrogenase 5F1 2Chr15:49664672–49682418 (+)5.437e-13
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)5.199e-15
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)2.401e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.39e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.39e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)4.178e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.462e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.546e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.546e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.545e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.546e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)3.863e-13
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)1.815e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)6.167e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)9.05e-13
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)9.05e-13
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)8.777e-11
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)3.23e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.099e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.099e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)3.477e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.505e-12
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)1.137e-12
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 1Chr15:48661607–48665946 (-)1.999e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)1.385e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.042e-12
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)6.449e-17
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)5.2e-15
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)1.59e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)2.401e-11
Glyma.18G079000 hypothetical protein NA 1Chr18:7595306–7600287 (-)6.568e-11
Glyma.18G260700 hypothetical protein NA 1Chr18:54660451–54661757 (+)1.175e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)6.125e-11
Glyma.18G264000 hypothetical protein AT3G29270:AT3G29270:RING/U-box superfamily protein 1Chr18:54933280–54938718 (+)1.217e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.393e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.393e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.927e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.92e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)3.843e-11