Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P23757

Metabolite ID
P23757
Deionized mass
248.1005 Da
Average m/z
249.1098
Average RT
14.2058
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
54
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

54 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)3.731e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.844e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.496e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.496e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.558e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.712e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.485e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.485e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)6.416e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)6.416e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)6.416e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.426e-11
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)9.246e-11
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)4.938e-11
Glyma.03G145700 hypothetical protein AT3G58030:AT3G58030:RING/U-box superfamily protein 1Chr03:36109689–36112241 (+)6.449e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.817e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)8.138e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.664e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.301e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)1.9e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.364e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.187e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.187e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)6.008e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)2.56e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)2.56e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)4.554e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)4.554e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.916e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.433e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)3.312e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.169e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.169e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.189e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.276e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.369e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.369e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)5.266e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.844e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.821e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.821e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.496e-14
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.841e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.197e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)6e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.712e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)1.328e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)8.563e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)4.568e-11
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)2.732e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.233e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.127e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.408e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)7.287e-11