Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P23633

Metabolite ID
P23633
Deionized mass
818.2208 Da
Average m/z
819.2305
Average RT
14.1690
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
46
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

46 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)2.586e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)8.594e-12
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)3.69e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.06e-11
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)3.628e-11
Glyma.03G041800 hypothetical protein NA 1Chr03:5307518–5311842 (+)4.114e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.02e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.168e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.514e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.098e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.098e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.978e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.152e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.152e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.152e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.053e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.651e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.626e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.936e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.936e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.06e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.06e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.06e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.06e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)6.322e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)6.322e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.412e-15
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.142e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.142e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.142e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.142e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)8.83e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)8.83e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)9.988e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.139e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.139e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.139e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)5.784e-12
Glyma.15G030100 hypothetical protein AT2G43290:MSS3:Calcium-binding EF-hand family protein__AT4G03290:AT4G03290:EF hand calcium-binding protein family 1Chr15:2420032–2426219 (+)1.011e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.634e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.374e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.634e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.634e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)8.594e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)8.594e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.829e-11