Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P23556

Metabolite ID
P23556
Deionized mass
289.0714 Da
Average m/z
290.0767
Average RT
14.1551
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
69
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

69 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.07G068800 hypothetical protein NA 3Chr07:6211775–6221107 (-)1.227e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)9.815e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 2Chr07:6146155–6148036 (-)2.239e-13
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 2Chr07:6169729–6172231 (+)7.109e-13
Glyma.07G068600 hypothetical protein NA 2Chr07:6192764–6197166 (+)2.341e-12
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 2Chr07:6200187–6208590 (+)1.227e-12
Glyma.07G107100 DHBK putative 3,4-dihydroxy-2-butanone kinase AT3G17770:AT3G17770:Dihydroxyacetone kinase 2Chr07:10447848–10456329 (+)3.13e-11
Glyma.08G182500 hypothetical protein NA 2Chr08:14639429–14643788 (+)3.387e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.566e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.566e-14
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)6.334e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.813e-12
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)1.832e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.412e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)5.35e-16
Glyma.04G190900 hypothetical protein AT5G63160:BT1:BTB and TAZ domain protein 1__AT3G48360:BT2:BTB and TAZ domain protein 2 1Chr04:46152356–46155245 (-)1.181e-11
Glyma.04G192000 hypothetical protein AT3G48430:REF6:relative of early flowering 6 1Chr04:46279239–46297477 (-)1.274e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)5.735e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.087e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.526e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.892e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.998e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.529e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)3.974e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.34e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.977e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.977e-13
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)8.303e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)2.857e-11
Glyma.07G058300 hypothetical protein AT1G01450:AT1G01450:Protein kinase superfamily protein 1Chr07:5208488–5211264 (-)1.803e-11
Glyma.07G058400 hypothetical protein AT3G25500:AFH1:formin homology 1 1Chr07:5217085–5221305 (-)1.134e-11
Glyma.07G068000 hypothetical protein AT3G61460:BRH1: 1Chr07:6128862–6129740 (+)1.031e-11
Glyma.07G068100 hypothetical protein NA 1Chr07:6135478–6137135 (+)5.75e-11
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)2.341e-12
Glyma.07G068500 hypothetical protein AT3G54980:AT3G54980:Pentatricopeptide repeat (PPR) superfamily protein__AT2G39230:LOJ:LATERAL ORGAN JUNCTION 1Chr07:6184449–6187743 (-)9.793e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)2.341e-12
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)5.81e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)1.954e-11
Glyma.07G072700 hypothetical protein NA 1Chr07:6612725–6619961 (+)6.825e-11
Glyma.07G072900 hypothetical protein NA 1Chr07:6636336–6643709 (+)5.169e-11
Glyma.07G073100 hypothetical protein NA 1Chr07:6656839–6661250 (-)2.956e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)5.66e-11
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)6.556e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)8.246e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)4.583e-11
Glyma.11G109900 hypothetical protein AT4G27630:GTG2:GPCR-type G protein 2 1Chr11:8378708–8386493 (-)6.6e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.369e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.369e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.566e-14
Glyma.14G011900 hypothetical protein AT5G55960:AT5G55960:transmembrane protein C9orf5 protein 1Chr14:902341–905336 (-)4.248e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.495e-13
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)4.725e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)8.548e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)7.454e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)7.453e-11
Glyma.16G138500 hypothetical protein NA 1Chr16:29564872–29566190 (+)4.947e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.699e-14
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)9.816e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.08e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.08e-11
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)2.001e-12
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)7.035e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.255e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.266e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.267e-13
Glyma.20G099900 hypothetical protein AT5G23390:AT5G23390:polygalacturonase inhibitor (DUF639) 1Chr20:34312783–34318966 (+)4.026e-13
Glyma.20G100000 Thioredoxin-like fold domain-containing protein MRL7L, chloroplastic AT2G31840:MRL7-L:Thioredoxin superfamily protein 1Chr20:34320945–34324107 (+)1.638e-11
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)1.358e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)4.637e-13