Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P23541

Metabolite ID
P23541
Deionized mass
660.2770 Da
Average m/z
661.2896
Average RT
14.1522
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
41
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

41 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.196e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.12e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)3.754e-13
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)7.834e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.196e-14
Glyma.01G016500 hypothetical protein AT4G25960:ABCB2:P-glycoprotein 2 1Chr01:1573790–1583422 (+)9.238e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.024e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)2.569e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)6.652e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.675e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.299e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.5e-11
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)4.116e-11
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)8.638e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.12e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.12e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.12e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.12e-14
Glyma.08G123100 hypothetical protein AT3G20050:TCP-1:T-complex protein 1 alpha subunit 1Chr08:9468076–9475710 (-)9.394e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)5.549e-14
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)5.549e-14
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)8.785e-12
Glyma.09G065900 hypothetical protein NA 1Chr09:6419980–6421918 (+)9.238e-11
Glyma.09G066000 hypothetical protein NA 1Chr09:6431656–6439981 (-)9.238e-11
Glyma.09G066200 hypothetical protein AT5G57030:LUT2:Lycopene beta/epsilon cyclase protein 1Chr09:6475361–6486120 (+)9.238e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.815e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.706e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.706e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.115e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.115e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)3.366e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.754e-13
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)7.369e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.573e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)9.938e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.573e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.573e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.042e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.042e-12
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)1.341e-11
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)1.518e-12