Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P23487

Metabolite ID
P23487
Deionized mass
559.1779 Da
Average m/z
560.1836
Average RT
14.1410
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
119
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

119 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G090600 hypothetical protein AT3G20290:EHD1:EPS15 homology domain 1 8Chr18:8991445–9001857 (-)2.72e-11
Glyma.07G068800 hypothetical protein NA 5Chr07:6211775–6221107 (-)1.161e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)2.85e-12
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)5.686e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)2.887e-14
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)7.672e-14
Glyma.07G065700 hypothetical protein AT3G61510:ACS1:ACC synthase 1 2Chr07:5923612–5927198 (+)9.164e-12
Glyma.07G068000 hypothetical protein AT3G61460:BRH1: 2Chr07:6128862–6129740 (+)4.35e-12
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 2Chr07:6169729–6172231 (+)1.505e-12
Glyma.07G068600 hypothetical protein NA 2Chr07:6192764–6197166 (+)1.633e-12
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 2Chr07:6270176–6283087 (-)4.701e-14
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)9.973e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)8.553e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)2.762e-12
Glyma.18G090100 hypothetical protein NA 2Chr18:8939839–8941585 (+)4.268e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.314e-12
Glyma.01G009700 hypothetical protein NA 1Chr01:952611–956924 (+)1.747e-11
Glyma.01G021000 hypothetical protein NA 1Chr01:2122589–2125447 (+)3.873e-11
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)2.279e-11
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)3.045e-11
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)3.045e-11
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)3.045e-11
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)4.911e-12
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)5.77e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)7.535e-14
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)8.11e-11
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)3.611e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)6.218e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.959e-12
Glyma.03G022300 hypothetical protein AT3G60880:DHDPS1:dihydrodipicolinate synthase 1 1Chr03:2331191–2334210 (-)1.772e-11
Glyma.03G055900 hypothetical protein AT2G38280:FAC1:AMP deaminase, putative / myoadenylate deaminase 1Chr03:7693451–7703679 (+)1.211e-11
Glyma.03G127800 hypothetical protein NA 1Chr03:34231323–34232268 (+)6.656e-11
Glyma.03G128000 hypothetical protein NA 1Chr03:34248662–34250541 (+)6.656e-11
Glyma.03G128100 hypothetical protein AT2G41210:PIP5K5:phosphatidylinositol- 4-phosphate 5-kinase 5 1Chr03:34252120–34257230 (+)6.656e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)7.473e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.671e-12
Glyma.04G083000 hypothetical protein AT4G32780:AT4G32780:phosphoinositide binding protein 1Chr04:7002219–7006087 (+)6.82e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.837e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)5.436e-13
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)7.656e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.629e-13
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)2.673e-15
Glyma.04G190700 hypothetical protein NA 1Chr04:46143583–46146881 (+)3.24e-11
Glyma.04G190800 hypothetical protein AT5G07460:PMSR2:peptidemethionine sulfoxide reductase 2 1Chr04:46143080–46147709 (-)3.24e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.699e-14
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.169e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.595e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.595e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.347e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.069e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.069e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.069e-12
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)2.24e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.584e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.731e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.859e-11
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)7.957e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)2.225e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)3.02e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)3.02e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)3.02e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.415e-18
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.415e-18
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)9.711e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)8.856e-15
Glyma.06G175200 SEOd NA 1Chr06:14822478–14829186 (-)2.874e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)1.967e-12
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)1.633e-12
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)1.161e-12
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)1.633e-12
Glyma.07G069600 hypothetical protein AT4G00370:ANTR2:Major facilitator superfamily protein 1Chr07:6307073–6313498 (-)6.593e-11
Glyma.07G070300 hypothetical protein AT2G45910:AT2G45910:U-box domain-containing protein kinase family protein 1Chr07:6364435–6372387 (-)9.359e-11
Glyma.07G078900 hypothetical protein AT3G61080:AT3G61080:Protein kinase superfamily protein 1Chr07:7187362–7192149 (+)8.362e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)5.11e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.892e-11
Glyma.08G132700 hypothetical protein NA 1Chr08:10163807–10167725 (-)2.8e-12
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)4.654e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)4.654e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.375e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.938e-12
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)5.193e-12
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)5.194e-12
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)1.437e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.965e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.965e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)7.529e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)7.529e-14
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.689e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.689e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.689e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.689e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.941e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.647e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)4.919e-14
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)6.03e-17
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)4.828e-11
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)9.946e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)3.79e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)9.608e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.346e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)6.601e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)1.412e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.25e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.25e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)6.253e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)4.8e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)8.553e-11
Glyma.18G089800 hypothetical protein AT5G55250:IAMT1:IAA carboxylmethyltransferase 1 1Chr18:8921173–8925579 (+)4.268e-11
Glyma.18G090300 hypothetical protein AT5G55210:AT5G55210:uncharacterized protein 1Chr18:8954961–8957926 (+)4.268e-11
Glyma.18G090500 hypothetical protein AT4G26810:AT4G26810:SWIB/MDM2 domain superfamily protein 1Chr18:8979176–8986302 (-)4.268e-11
Glyma.18G090700 hypothetical protein NA 1Chr18:9016075–9018183 (+)2.72e-11
Glyma.18G090800 hypothetical protein AT3G20300:AT3G20300:extracellular ligand-gated ion channel protein (DUF3537) 1Chr18:9018768–9024832 (-)4.268e-11
Glyma.18G200500 hypothetical protein AT3G51860:CAX3:cation exchanger 3 1Chr18:48016361–48020799 (-)5.942e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)9.17e-13
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)5.185e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.314e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)6.327e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.511e-11
Glyma.20G223300 hypothetical protein AT1G09770:CDC5:cell division cycle 5 1Chr20:45791239–45803369 (-)4.149e-11