Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P23473

Metabolite ID
P23473
Deionized mass
442.1838 Da
Average m/z
443.1866
Average RT
14.1369
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)8.214e-12
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)2.501e-17
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)7.363e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.378e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.34e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)3.272e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)8.794e-11
Glyma.05G147700 hypothetical protein NA 1Chr05:34199925–34202541 (+)2.456e-12
Glyma.05G154000 hypothetical protein NA 1Chr05:34732843–34735376 (-)3.521e-13
Glyma.05G169100 hypothetical protein NA 1Chr05:35959241–35961911 (+)5.644e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)3.049e-12
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)9.316e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.062e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.337e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.861e-13
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.331e-13
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)3.276e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)4.756e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)3.189e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)3.189e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)4.78e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.255e-14
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.255e-14
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.255e-14
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.255e-14
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.472e-15
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)9.142e-12
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)4.148e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)7.141e-11
Glyma.11G109100 hypothetical protein NA 1Chr11:8322727–8324868 (-)2.415e-11
Glyma.11G109900 hypothetical protein AT4G27630:GTG2:GPCR-type G protein 2 1Chr11:8378708–8386493 (-)6.965e-12
Glyma.12G098000 hypothetical protein NA 1Chr12:8432078–8439545 (+)8.008e-11
Glyma.12G098300 hypothetical protein NA 1Chr12:8458112–8459817 (+)8.007e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.141e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.141e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.168e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)7.168e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)7.168e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)7.363e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.341e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.043e-12
Glyma.16G093700 hypothetical protein NA 1Chr16:15100987–15107038 (+)6.932e-11
Glyma.16G093800 hypothetical protein NA 1Chr16:15144247–15160454 (-)6.932e-11
Glyma.16G094200 hypothetical protein NA 1Chr16:15770075–15772475 (-)6.932e-11
Glyma.16G094300 hypothetical protein AT5G44650:CEST:death domain associated protein 1Chr16:15796268–15811033 (-)6.932e-11
Glyma.16G094500 hypothetical protein AT1G30825:DIS2:Arp2/3 complex, 34 kD subunit p34-Arc 1Chr16:15914865–15930406 (-)6.932e-11
Glyma.16G095100 hypothetical protein AT1G32080:LrgB:uncharacterized protein 1Chr16:16891012–16896814 (-)6.932e-11
Glyma.16G095200 hypothetical protein AT2G35530:bZIP16:basic region/leucine zipper transcription factor 16 1Chr16:16911412–16924907 (-)6.932e-11
Glyma.16G096000 Site-2 protease AT4G20310:AT4G20310:Peptidase M50 family protein 1Chr16:17694666–17720668 (+)6.932e-11
Glyma.16G096600 hypothetical protein AT5G58140:PHOT2:phototropin 2 1Chr16:18621149–18647713 (-)6.932e-11
Glyma.16G096900 hypothetical protein AT1G68690:PERK9:Protein kinase superfamily protein 1Chr16:18767931–18777350 (-)6.932e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)1.132e-13
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)3.008e-15
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)9.256e-14
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)4.482e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.37e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)8.214e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)8.214e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.543e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)6.309e-14
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)1.835e-11
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)2.425e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)3.31e-11