Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P23423

Metabolite ID
P23423
Deionized mass
344.0743 Da
Average m/z
345.0801
Average RT
14.1246
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
55
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

55 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)4.037e-11
Glyma.18G059600 hypothetical protein NA 3Chr18:5283311–5291592 (+)5.862e-11
Glyma.18G107900 hypothetical protein AT1G06490:CalS7:glucan synthase-like 7 3Chr18:12220182–12260477 (+)3.474e-11
Glyma.16G178800 hypothetical protein NA 2Chr16:33950003–33953968 (-)2.209e-11
Glyma.16G178900 hypothetical protein AT4G25720:QC:glutaminyl cyclase 2Chr16:33954446–33960344 (+)3.401e-11
Glyma.18G063200 hypothetical protein NA 2Chr18:5779244–5784529 (+)5.524e-15
Glyma.18G063400 hypothetical protein AT2G29940:ABCG31:pleiotropic drug resistance 3 2Chr18:5796259–5805903 (-)5.524e-15
Glyma.18G066700 hypothetical protein NA 2Chr18:6155048–6161828 (+)5.041e-11
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)8.134e-13
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.807e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.807e-12
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)1.384e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.314e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)6.757e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.133e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.472e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.177e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.121e-13
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)4.339e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.383e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)5.843e-11
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)5.858e-11
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)5.858e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)1.363e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)1.363e-11
Glyma.09G187700 hypothetical protein AT3G24420:AT3G24420:alpha/beta-Hydrolases superfamily protein 1Chr09:41217358–41221592 (-)1.498e-11
Glyma.10G274700 hypothetical protein AT1G68560:XYL1:alpha-xylosidase 1__AT3G45940:AT3G45940:Glycosyl hydrolases family 31 protein 1Chr10:49769554–49774168 (-)1.056e-12
Glyma.11G000700 hypothetical protein AT4G34150:AT4G34150:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr11:33497–35198 (+)1.359e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)5.778e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)5.029e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.126e-12
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)3.637e-11
Glyma.16G178700 hypothetical protein AT5G52660:AT5G52660:Homeodomain-like superfamily protein 1Chr16:33941617–33948775 (+)3.401e-11
Glyma.16G179100 BCH2 beta-carotene hydroxylase BCH2 AT4G25700:BETA-OHASE 1:beta-hydroxylase 1__AT5G52570:BETA-OHASE 2:beta-carotene hydroxylase 2 1Chr16:33969618–33972333 (-)3.401e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.607e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)2.638e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.403e-12
Glyma.18G055300 PER1 peroxidase NA 1Chr18:4805286–4809267 (-)5.862e-11
Glyma.18G059000 hypothetical protein NA 1Chr18:5221254–5226837 (-)5.862e-11
Glyma.18G059100 hypothetical protein NA 1Chr18:5227760–5229525 (+)5.862e-11
Glyma.18G059200 hypothetical protein AT5G58530:AT5G58530:Glutaredoxin family protein 1Chr18:5233333–5238882 (+)5.862e-11
Glyma.18G059800 hypothetical protein AT2G30100:AT2G30100:pentatricopeptide (PPR) repeat-containing protein 1Chr18:5303044–5306448 (-)5.862e-11
Glyma.18G060700 hypothetical protein AT1G07120:AT1G07120:CHUP1-like protein 1Chr18:5471610–5474303 (-)5.862e-11
Glyma.18G060900 hypothetical protein AT2G30040:MAPKKK14:mitogen-activated protein kinase kinase kinase 14 1Chr18:5486854–5488508 (-)5.862e-11
Glyma.18G061100 AS1 asparagine synthetase 1 AT3G47340:ASN1:glutamine-dependent asparagine synthase 1 1Chr18:5539339–5544439 (+)5.862e-11
Glyma.18G062800 hypothetical protein NA 1Chr18:5752483–5753187 (+)5.524e-15
Glyma.18G064000 hypothetical protein AT1G07230:NPC1:non-specific phospholipase C1 1Chr18:5847976–5851846 (-)5.524e-15
Glyma.18G064700 hypothetical protein AT5G58930:AT5G58930:__AT3G46990:AT3G46990:DUF740 family protein, putative (DUF740) 1Chr18:5893632–5895734 (+)5.524e-15
Glyma.18G065700 hypothetical protein AT2G29630:THIC:thiaminC 1Chr18:6008424–6016165 (+)5.524e-15
Glyma.18G066900 hypothetical protein AT2G29680:CDC6:cell division control 6 1Chr18:6167590–6173086 (-)5.192e-11
Glyma.18G067000 hypothetical protein AT2G29890:VLN1:villin-like 1 1Chr18:6185551–6203032 (+)5.192e-11
Glyma.18G073500 hypothetical protein AT3G44730:KP1:kinesin-like protein 1 1Chr18:6971929–6982758 (+)2.871e-12
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)7.323e-11
Glyma.18G105800 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein 1Chr18:11773374–11782733 (+)7.084e-11
Glyma.18G106300 hypothetical protein NA 1Chr18:11900700–11905446 (-)7.084e-11