Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P23393

Metabolite ID
P23393
Deionized mass
344.0751 Da
Average m/z
345.0827
Average RT
14.1130
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
71
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

71 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)4.249e-14
Glyma.06G098300 hypothetical protein AT5G49680:AT5G49680:SABRE-like protein__AT1G58250:SAB:HYPERSENSITIVE TO PI STARVATION 4 2Chr06:7796762–7832753 (-)5.253e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.18e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.18e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.18e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)2.873e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)5.852e-15
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)4.886e-12
Glyma.01G039400 hypothetical protein AT1G10417:AT1G10417:RUN/FYVE domain protein 1Chr01:4270598–4275060 (+)1.831e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.083e-14
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)3.514e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.194e-14
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)3.703e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)8.452e-14
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.399e-15
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.385e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.385e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.179e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.4e-16
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.4e-16
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.4e-16
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)3.701e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)8.688e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.774e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.726e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.823e-12
Glyma.06G097800 hypothetical protein AT1G58230:AT1G58230:binding protein 1Chr06:7725465–7766431 (+)5.253e-12
Glyma.06G098200 hypothetical protein NA 1Chr06:7790290–7791746 (+)5.253e-12
Glyma.06G098700 hypothetical protein NA 1Chr06:7851216–7866791 (-)5.253e-12
Glyma.06G098800 hypothetical protein AT1G29060:AT1G29060:Target SNARE coiled-coil domain protein 1Chr06:7869693–7873331 (+)5.253e-12
Glyma.06G098900 hypothetical protein AT1G12680:PEPKR2:phosphoenolpyruvate carboxylase-related kinase 2 1Chr06:7874852–7879537 (-)5.253e-12
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)6.374e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)4.249e-14
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)4.249e-14
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.555e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)1.75e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.901e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.285e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)4.273e-12
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)4.568e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)8.797e-13
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)7.168e-13
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.18e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.18e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.18e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.18e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.18e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)1.189e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)1.906e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.37e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.37e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.215e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)4.215e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.54e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.54e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.54e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.54e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.791e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.072e-11
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)6.414e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.558e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.964e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)7.26e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)7.26e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.932e-12
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)3.067e-11
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)5.95e-12
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)7.318e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)7.643e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)7.318e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)7.318e-11