Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P23352

Metabolite ID
P23352
Deionized mass
649.2718 Da
Average m/z
650.2831
Average RT
14.1028
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.292e-11
Glyma.02G062600 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 2Chr02:5645621–5648965 (+)4.657e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.024e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.024e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)9.697e-15
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)2.268e-12
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)5.387e-13
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)7.623e-13
Glyma.03G007100 hypothetical protein AT5G17780:AT5G17780:alpha/beta-Hydrolases superfamily protein__AT5G17720:AT5G17720:alpha/beta-Hydrolases superfamily pr… 1Chr03:647777–651152 (-)3.619e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)6.985e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)5.416e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.473e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.346e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)4.712e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.626e-18
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.042e-19
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.297e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.475e-17
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.475e-17
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)3.955e-13
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)1.391e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.856e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.856e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.497e-11
Glyma.07G078000 hypothetical protein NA 1Chr07:7121636–7126695 (+)7.788e-11
Glyma.08G136700 hypothetical protein NA 1Chr08:10457207–10460163 (-)8.358e-12
Glyma.08G137600 hypothetical protein AT4G39780:AT4G39780:Integrase-type DNA-binding superfamily protein 1Chr08:10551821–10553620 (-)9.72e-12
Glyma.08G227900 hypothetical protein NA 1Chr08:18551920–18567339 (-)3.742e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)8.049e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)3.012e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.306e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.306e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.306e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.306e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.617e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.708e-12
Glyma.10G257500 hypothetical protein NA 1Chr10:48386988–48389180 (-)4.501e-12
Glyma.10G264300 Mediator of RNA polymerase II transcription subunit 21 AT4G04780:MED21:mediator 21 1Chr10:48858818–48862498 (-)6.902e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)9.573e-13
Glyma.10G266400 hypothetical protein NA 1Chr10:48984735–48993690 (+)1.674e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)8.204e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.833e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)9.289e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)9.289e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)9.289e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)9.289e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)5.946e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)5.945e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)5.946e-12
Glyma.11G238100 hypothetical protein AT4G39820:AT4G39820:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr11:33261569–33264662 (+)6.048e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.268e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.268e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.485e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.485e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.292e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)4.506e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.287e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.287e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.024e-14
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)2.078e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.786e-12
Glyma.14G198100 hypothetical protein NA 1Chr14:46337677–46340654 (+)5.093e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)9.697e-15
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)1.893e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)5.711e-12
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)4.398e-11
Glyma.15G275100 hypothetical protein AT5G42470:AT5G42470:BRCA1-A complex subunit BRE-like protein 1Chr15:51350998–51355557 (-)3.748e-14
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.451e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.904e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.495e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)6.181e-14
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.551e-14
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)3.777e-11
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)3.777e-11
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)3.777e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)4.706e-15
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)1.134e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)2.262e-12