Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P23255

Metabolite ID
P23255
Deionized mass
268.1642 Da
Average m/z
269.1711
Average RT
14.0801
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
80
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

80 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)4.75e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)2.689e-11
Glyma.01G045600 hypothetical protein NA 2Chr01:5242432–5245038 (-)9.662e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)6.256e-12
Glyma.09G042600 hypothetical protein AT5G49150:GEX2:gamete expressed 2 2Chr09:3636044–3644796 (-)2.196e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)1.635e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)4.409e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)2.442e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)9.662e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.343e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.343e-11
Glyma.02G033500 hypothetical protein AT1G60140:TPS10:trehalose phosphate synthase__AT1G70290:TPS8:trehalose-6-phosphatase synthase S8__AT1G23870:TPS9:trehal… 1Chr02:3098851–3104217 (-)7.21e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.064e-11
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)3.178e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.549e-14
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.709e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)3.185e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.09e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)5.464e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.228e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.556e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.556e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.556e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)3.714e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.078e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.325e-24
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.747e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.831e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.831e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)2.185e-12
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)8.058e-13
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.824e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.221e-11
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)3.885e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.197e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.574e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)5.566e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)9.061e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)9.061e-14
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.531e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.531e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.715e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.715e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.762e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.46e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.46e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.394e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.394e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.394e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.851e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)9.396e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)8.657e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.857e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.649e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.438e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.058e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)9.714e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)5.429e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)8.567e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)7.851e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)4.156e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.195e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.119e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)9.886e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)6.305e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.689e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)6.628e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)6.628e-13
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.419e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)4.409e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)8.291e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)9.569e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)6.197e-13
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.446e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)5.834e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.118e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.118e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)4.265e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.138e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)7.823e-11