Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P22839

Metabolite ID
P22839
Deionized mass
188.0829 Da
Average m/z
189.0899
Average RT
13.9622
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
41
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

41 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)5.24e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)5.196e-11
Glyma.02G115900 hypothetical protein AT1G26480:GRF12:ral regulatory factor 12 1Chr02:11280858–11285984 (+)3.506e-13
Glyma.05G169100 hypothetical protein NA 1Chr05:35959241–35961911 (+)1.801e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.504e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.343e-21
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.884e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.864e-11
Glyma.08G199700 hypothetical protein AT5G50340:AT5G50340:DNA repair protein RadA-like protein 1Chr08:16130591–16137703 (+)6.306e-12
Glyma.08G199800 hypothetical protein NA 1Chr08:16137933–16142956 (-)6.306e-12
Glyma.08G199900 hypothetical protein AT3G16480:MPPalpha:mitochondrial processing peptidase alpha subunit 1Chr08:16146033–16151741 (+)6.306e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.03e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.933e-17
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.582e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)2.016e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)8.932e-14
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)6.421e-14
Glyma.11G182800 hypothetical protein AT2G27460:AT2G27460:sec23/sec24 transport family protein 1Chr11:25044939–25052549 (+)1.167e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.181e-15
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.181e-15
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.959e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.145e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.422e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)5.422e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)3.687e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)3.687e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)3.687e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)4.29e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)7.395e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.768e-11
Glyma.16G059600 hypothetical protein NA 1Chr16:5815769–5818052 (-)3.835e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)4.754e-11
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)4.114e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)2.39e-11
Glyma.18G257800 hypothetical protein NA 1Chr18:54346048–54349189 (+)9.238e-11
Glyma.18G264700 hypothetical protein AT5G15470:GAUT14:galacturonosyltransferase 14__AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr18:54973306–54979374 (-)6.315e-11
Glyma.18G265500 hypothetical protein AT5G39250:AT5G39250:F-box family protein 1Chr18:55019514–55022070 (-)4.256e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)2.415e-14
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 1Chr18:55076548–55086297 (+)8.043e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)4.694e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.316e-11