Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P22745

Metabolite ID
P22745
Deionized mass
476.1290 Da
Average m/z
477.1373
Average RT
13.9433
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)1.413e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)2.404e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)5.973e-12
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)4.667e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.093e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)7.971e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)7.014e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.915e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.915e-14
Glyma.02G081900 hypothetical protein AT1G43650:UMAMIT22:nodulin MtN21 /EamA-like transporter family protein 1Chr02:7075646–7080163 (-)1.318e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.341e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)5.046e-12
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)7.038e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)8.122e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.27e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.27e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.632e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.075e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.075e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.075e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.419e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.349e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.758e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.758e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.093e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.093e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.093e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.093e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.889e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.889e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.698e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)6.698e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)6.698e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.096e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)7.971e-11
Glyma.15G030100 hypothetical protein AT2G43290:MSS3:Calcium-binding EF-hand family protein__AT4G03290:AT4G03290:EF hand calcium-binding protein family 1Chr15:2420032–2426219 (+)9.287e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)7.13e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.877e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)5.973e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)5.973e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.353e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.226e-13
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)4.542e-13
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)1.288e-15
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)2.269e-11