Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P22456

Metabolite ID
P22456
Deionized mass
266.0892 Da
Average m/z
267.0958
Average RT
13.8654
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
64
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

64 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G218700 hypothetical protein AT5G47520:RABA5a:RAB GTPase homolog A5A 3Chr20:45447355–45452750 (-)7.726e-17
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 2Chr05:32021521–32025767 (-)2.14e-12
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 2Chr06:48170133–48173010 (-)8.163e-13
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)2.729e-11
Glyma.20G218500 hypothetical protein AT4G10465:AT4G10465:Heavy metal transport/detoxification superfamily protein__AT2G18196:AT2G18196:Heavy metal transport… 2Chr20:45428471–45432099 (+)5.854e-18
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)6.52e-11
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)6.272e-11
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)6.272e-11
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)6.272e-11
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)2.34e-11
Glyma.02G294900 hypothetical protein AT5G55220:AT5G55220:trigger factor type chaperone family protein 1Chr02:47300149–47306133 (+)7.924e-11
Glyma.02G295000 hypothetical protein AT4G26770:AT4G26770:Phosphatidate cytidylyltransferase family protein 1Chr02:47306160–47312036 (-)7.924e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)4.698e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.056e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.14e-12
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)5.324e-14
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)3.622e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.305e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.199e-11
Glyma.06G289600 hypothetical protein AT5G51740:AT5G51740:Peptidase family M48 family protein 1Chr06:47831855–47835534 (-)8.208e-11
Glyma.06G289900 hypothetical protein AT2G20590:AT2G20590:Reticulon family protein 1Chr06:47861573–47865518 (-)5.451e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)3.665e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.146e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)3.665e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)3.665e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.146e-11
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)8.899e-13
Glyma.07G007100 hypothetical protein NA 1Chr07:529398–533680 (+)2.067e-11
Glyma.07G007400 hypothetical protein AT1G54270:EIF4A-2:eif4a-2__AT3G13920:EIF4A1:eukaryotic translation initiation factor 4A1__AT1G72730:AT1G72730:DEA(D/H)-… 1Chr07:549904–553210 (+)2.067e-11
Glyma.07G009600 hypothetical protein AT3G13860:HSP60-3A:heat shock protein 60-3A 1Chr07:718009–725377 (-)9.131e-12
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)7.993e-13
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)7.993e-13
Glyma.07G014300 hypothetical protein NA 1Chr07:1115661–1120213 (-)3.468e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)1.072e-13
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)1.072e-13
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)6.617e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.964e-14
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)7.346e-15
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)5.552e-12
Glyma.09G069400 hypothetical protein NA 1Chr09:7055066–7058933 (+)2.787e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.299e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.299e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)9.849e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)9.849e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)9.849e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)5.067e-12
Glyma.14G071900 hypothetical protein AT1G19650:AT1G19650:Sec14p-like phosphatidylinositol transfer family protein__AT1G75370:AT1G75370:Sec14p-like phosphati… 1Chr14:6043655–6049030 (+)5.067e-12
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)2.195e-11
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)9.318e-11
Glyma.16G172600 hypothetical protein AT3G59140:ABCC10:multidrug resistance-associated protein 14 1Chr16:33333664–33344521 (-)6.968e-11
Glyma.18G072800 hypothetical protein AT1G55760:AT1G55760:BTB/POZ domain-containing protein 1Chr18:6873417–6878947 (-)8.874e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)2.919e-13
Glyma.20G177600 hypothetical protein AT1G07900:LBD1:LOB domain-containing protein 1 1Chr20:41506046–41507720 (+)1.311e-11
Glyma.20G179000 hypothetical protein NA 1Chr20:41630613–41632249 (-)6.387e-11
Glyma.20G214500 hypothetical protein AT3G56570:AT3G56570:SET domain-containing protein 1Chr20:45048013–45052853 (-)4.367e-12
Glyma.20G214600 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr20:45054337–45063891 (+)4.367e-12
Glyma.20G215100 hypothetical protein AT5G26360:AT5G26360:TCP-1/cpn60 chaperonin family protein 1Chr20:45086549–45093848 (-)4.367e-12
Glyma.20G215200 hypothetical protein AT5G08440:AT5G08440:uncharacterized protein__AT5G23490:AT5G23490:uncharacterized protein 1Chr20:45100276–45116630 (+)4.367e-12
Glyma.20G215600 hypothetical protein NA 1Chr20:45161092–45163794 (-)4.367e-12
Glyma.20G217600 hypothetical protein NA 1Chr20:45339886–45344226 (+)2.62e-13
Glyma.20G217800 hypothetical protein AT1G32850:UBP11:ubiquitin-specific protease 11__AT4G10590:UBP10:ubiquitin-specific protease 10 1Chr20:45369972–45380130 (+)2.62e-13
Glyma.20G218100 hypothetical protein AT1G32900:GBSS1:UDP-Glycosyltransferase superfamily protein 1Chr20:45387265–45391879 (-)6.412e-11
Glyma.20G221100 hypothetical protein AT3G04260:PTAC3:plastid transcriptionally active 3 1Chr20:45604663–45615422 (-)7.302e-12
Glyma.20G221200 hypothetical protein NA 1Chr20:45616970–45619607 (-)2.032e-11