Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P22339

Metabolite ID
P22339
Deionized mass
386.1520 Da
Average m/z
387.1579
Average RT
13.8361
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 4Chr03:2423540–2428634 (-)5.912e-22
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 4Chr16:35831912–35835153 (+)2.54e-13
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)1.077e-12
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)6.072e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.408e-12
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)1.419e-13
Glyma.06G201700 hypothetical protein NA 2Chr06:18577883–18617874 (+)3.071e-11
Glyma.06G206000 hypothetical protein AT5G08110:AT5G08110:UBQ, helicase-c and DEAD-like helicase domain-containing protein 2Chr06:19693187–19711341 (-)8.7e-11
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)3.241e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)9.888e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)9.888e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)8.397e-13
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.99e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.99e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.803e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.792e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.992e-13
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.191e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)3.598e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)6.586e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.919e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.468e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.113e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)4.662e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)4.662e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)4.662e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)4.111e-13
Glyma.06G204200 hypothetical protein AT5G08050:AT5G08050:wiskott-aldrich syndrome family protein, putative (DUF1118) 1Chr06:19170925–19173352 (+)5.261e-11
Glyma.06G205800 AP1A agamous-like MADS-box AT5G60910:AGL8:AGAMOUS-like 8 1Chr06:19583729–19590906 (+)8.7e-11
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)5.905e-11
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)5.905e-11
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)5.905e-11
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)5.905e-11
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)5.905e-11
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)5.905e-11
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)5.905e-11
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)5.905e-11
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)5.905e-11
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)5.905e-11
Glyma.06G211700 hypothetical protein NA 1Chr06:21226061–21226529 (-)9.493e-11
Glyma.06G211800 hypothetical protein NA 1Chr06:21237649–21239875 (+)9.493e-11
Glyma.06G213600 hypothetical protein NA 1Chr06:21713618–21726865 (+)9.493e-11
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)3.368e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.47e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)4.491e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.47e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.47e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)4.491e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.934e-11
Glyma.07G034300 hypothetical protein NA 1Chr07:2701469–2717662 (-)7.056e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.574e-11
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)4.254e-11
Glyma.08G183500 SWEET24 sugar efflux transporter SWEET24 AT5G13170:SAG29:senescence-associated 29 1Chr08:14724384–14726579 (+)7.859e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)6.695e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)2.803e-11
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 1Chr11:15087390–15090683 (-)8.178e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.609e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.609e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.466e-15
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.466e-15
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)5.655e-16
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.182e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)3.182e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)9.886e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)8.634e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.408e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.888e-14
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.888e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.532e-13
Glyma.13G369100 hypothetical protein NA 1Chr13:45464047–45467920 (+)3.125e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)3.338e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)6.969e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.407e-13
Glyma.17G257100 hypothetical protein AT1G75660:XRN3:5'-3' exoribonuclease 3 1Chr17:41113121–41125026 (+)3.256e-11
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)3.65e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)5.1e-11
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)2.689e-11
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)5.03e-11