Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P21968

Metabolite ID
P21968
Deionized mass
304.0452 Da
Average m/z
305.0528
Average RT
13.7415
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G147800 hypothetical protein NA 4Chr08:11266659–11274890 (+)1.379e-11
Glyma.08G148300 hypothetical protein AT4G16340:SPK1:guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein 4Chr08:11312041–11345534 (-)1.379e-11
Glyma.08G147500 hypothetical protein AT3G18680:AT3G18680:Amino acid kinase family protein 3Chr08:11253074–11256505 (+)2.984e-16
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)3.91e-12
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)5.609e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)3.605e-13
Glyma.10G272800 hypothetical protein AT1G25350:OVA9:glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS 2Chr10:49530856–49539222 (+)3.282e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)5.291e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)5.291e-14
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)5.609e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.123e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)6.988e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.265e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.871e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.871e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.871e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.227e-12
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)2.274e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)1.893e-13
Glyma.08G148100 hypothetical protein AT1G78570:RHM1:rhamnose biosynthesis 1 1Chr08:11291040–11298606 (-)1.379e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.373e-11
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)1.458e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)1.458e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.674e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)8.55e-11
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)1.488e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.13e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.13e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.291e-14
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)3.828e-11
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)1.684e-11
Glyma.15G048200 hypothetical protein AT1G25260:AT1G25260:Ribosomal protein L10 family protein 1Chr15:3812816–3815263 (+)8.324e-11
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)6.348e-11
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)6.446e-11
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)3.915e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)1.992e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.172e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.721e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.499e-13
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)7.766e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.038e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.038e-11