Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P21954

Metabolite ID
P21954
Deionized mass
534.2340 Da
Average m/z
535.2356
Average RT
13.7395
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
54
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

54 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G247600 hypothetical protein AT1G44350:ILL6:IAA-amino acid hydrolase ILR1-like 6 6Chr04:51480159–51488320 (+)7.138e-11
Glyma.04G251500 hypothetical protein AT1G44835:AT1G44835:YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein 3Chr04:51829894–51834052 (+)7.138e-11
Glyma.02G271300 hypothetical protein AT4G15430:AT4G15430:ERD (early-responsive to dehydration stress) family protein 2Chr02:45512377–45519675 (+)7.138e-11
Glyma.04G251400 hypothetical protein AT1G44830:AT1G44830:Integrase-type DNA-binding superfamily protein 2Chr04:51825158–51826943 (+)7.138e-11
Glyma.04G251900 hypothetical protein AT4G08250:AT4G08250:GRAS family transcription factor 2Chr04:51872753–51874821 (+)7.138e-11
Glyma.04G252000 hypothetical protein AT2G41705:AT2G41705:camphor resistance CrcB family protein 2Chr04:51882953–51887424 (-)7.138e-11
Glyma.04G252700 hypothetical protein AT1G77720:PPK1:putative protein kinase 1 2Chr04:51934937–51939413 (+)7.138e-11
Glyma.04G253300 hypothetical protein NA 2Chr04:52004876–52006986 (-)7.138e-11
Glyma.04G253400 hypothetical protein NA 2Chr04:52009156–52016433 (-)7.138e-11
Glyma.13G046600 hypothetical protein NA 2Chr13:14105161–14115147 (-)7.138e-11
Glyma.17G225400 hypothetical protein NA 2Chr17:37849485–37855509 (+)2.238e-11
Glyma.18G172600 hypothetical protein AT5G48850:ATSDI1:Tetratricopeptide repeat (TPR)-like superfamily protein 2Chr18:40894096–40899091 (-)9.265e-12
Glyma.18G172700 hypothetical protein NA 2Chr18:40940614–40943969 (-)9.265e-12
Glyma.19G148800 hypothetical protein AT5G06720:PA2:peroxidase 2 2Chr19:40914213–40916538 (+)2.3e-11
Glyma.01G182300 hypothetical protein AT4G37090:AT4G37090:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase 1Chr01:51790685–51792859 (-)7.138e-11
Glyma.02G271100 WBb98N11.19 AT4G15420:AT4G15420:Ubiquitin fusion degradation UFD1 family protein 1Chr02:45498918–45502715 (+)7.138e-11
Glyma.04G251000 hypothetical protein AT4G08290:UMAMIT20:nodulin MtN21 /EamA-like transporter family protein 1Chr04:51760822–51766080 (-)7.138e-11
Glyma.04G251300 hypothetical protein NA 1Chr04:51808728–51810705 (-)7.138e-11
Glyma.04G252100 hypothetical protein NA 1Chr04:51892841–51893763 (+)7.138e-11
Glyma.04G252500 hypothetical protein NA 1Chr04:51920445–51924637 (+)7.138e-11
Glyma.04G252600 hypothetical protein NA 1Chr04:51926107–51928268 (-)7.138e-11
Glyma.04G252800 hypothetical protein AT2G17900:SDG37:SET domain group 37 1Chr04:51939778–51946490 (-)7.138e-11
Glyma.04G252900 hypothetical protein AT1G37150:HCS2:holocarboxylase synthetase 2__AT2G25710:HCS1:holocarboxylase synthase 1 1Chr04:51946270–51951849 (+)7.138e-11
Glyma.04G253100 hypothetical protein NA 1Chr04:51988819–51993371 (+)7.138e-11
Glyma.04G253200 hypothetical protein NA 1Chr04:51992841–51993199 (-)7.138e-11
Glyma.04G253500 hypothetical protein NA 1Chr04:52018537–52026002 (-)7.138e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)9.721e-12
Glyma.09G193400 SPEAR4 NA 1Chr09:41798679–41801101 (+)2.688e-11
Glyma.09G193600 hypothetical protein AT4G28860:ckl4:casein kinase I-like 4 1Chr09:41819985–41825925 (+)2.688e-11
Glyma.09G194300 hypothetical protein NA 1Chr09:41867600–41868959 (-)2.688e-11
Glyma.09G278500 hypothetical protein NA 1Chr09:49384135–49397229 (+)7.138e-11
Glyma.13G176600 hypothetical protein AT1G28380:NSL1:MAC/Perforin domain-containing protein 1Chr13:29066855–29072319 (-)7.138e-11
Glyma.13G177900 hypothetical protein AT2G33800:EMB3113:Ribosomal protein S5 family protein 1Chr13:29182486–29185046 (+)7.138e-11
Glyma.13G200400 hypothetical protein NA 1Chr13:31403066–31411738 (+)7.138e-11
Glyma.18G165100 hypothetical protein NA 1Chr18:38438553–38442264 (+)9.265e-12
Glyma.18G165700 hypothetical protein AT4G13080:XTH1:xyloglucan endotransglucosylase/hydrolase 1 1Chr18:38708433–38711152 (+)9.265e-12
Glyma.18G166200 hypothetical protein NA 1Chr18:38835794–38839323 (+)9.265e-12
Glyma.18G166500 hypothetical protein NA 1Chr18:38910652–38912358 (-)9.265e-12
Glyma.18G166600 hypothetical protein NA 1Chr18:38955092–38962893 (-)9.265e-12
Glyma.18G166700 hypothetical protein NA 1Chr18:39022943–39028645 (-)9.265e-12
Glyma.18G166800 RIN4c RIN4c protein AT3G25070:RIN4:RPM1 interacting protein 4 1Chr18:39063147–39068309 (+)9.265e-12
Glyma.18G169600 hypothetical protein NA 1Chr18:39634267–39654842 (+)9.265e-12
Glyma.18G169700 hypothetical protein NA 1Chr18:39667384–39672312 (-)9.265e-12
Glyma.18G169800 hypothetical protein AT3G24840:AT3G24840:Sec14p-like phosphatidylinositol transfer family protein 1Chr18:39733569–39743990 (-)9.265e-12
Glyma.18G170200 hypothetical protein AT1G16180:AT1G16180:Serinc-domain containing serine and sphingolipid biosynthesis protein 1Chr18:39913165–39922229 (+)9.265e-12
Glyma.18G170400 hypothetical protein NA 1Chr18:40013651–40019778 (+)9.265e-12
Glyma.18G171400 hypothetical protein AT3G24800:PRT1:proteolysis 1 1Chr18:40374838–40382034 (+)9.265e-12
Glyma.18G171700 hypothetical protein NA 1Chr18:40492392–40502970 (-)9.265e-12
Glyma.18G171900 hypothetical protein AT5G48830:AT5G48830:phosphoglycolate phosphatase 1Chr18:40625211–40632983 (-)9.265e-12
Glyma.18G172200 hypothetical protein NA 1Chr18:40819908–40822164 (-)9.265e-12
Glyma.18G172800 hypothetical protein AT5G48850:ATSDI1:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr18:40947369–40951223 (-)9.265e-12
Glyma.18G173000 hypothetical protein NA 1Chr18:40995949–40998255 (+)9.265e-12
Glyma.18G175100 hypothetical protein NA 1Chr18:41454656–41454865 (-)9.265e-12
Glyma.18G175200 hypothetical protein NA 1Chr18:41481433–41484199 (-)9.265e-12