Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P21889

Metabolite ID
P21889
Deionized mass
610.2201 Da
Average m/z
611.2313
Average RT
13.7237
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G161500 hypothetical protein NA 6Chr16:32076715–32092322 (-)9.912e-13
Glyma.16G159100 hypothetical protein NA 3Chr16:31889835–31894662 (+)1.882e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)1.263e-14
Glyma.04G086600 hypothetical protein NA 2Chr04:7374806–7380808 (+)3.479e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)2.891e-13
Glyma.16G144200 hypothetical protein AT3G50380:AT3G50380:vacuolar protein sorting-associated protein, putative (DUF1162) 2Chr16:30434508–30475458 (-)6.383e-12
Glyma.16G145100 hypothetical protein NA 2Chr16:30578388–30581421 (-)2.823e-16
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)1.36e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)5.658e-11
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)2.703e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)2.598e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)3.427e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.401e-13
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)3.12e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)2.155e-13
Glyma.06G203300 hypothetical protein AT1G18640:PSP:3-phosphoserine phosphatase 1Chr06:19025714–19030363 (+)4.59e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.859e-13
Glyma.07G136100 hypothetical protein NA 1Chr07:16113273–16117600 (+)3.497e-11
Glyma.07G136500 hypothetical protein AT3G53830:AT3G53830:Regulator of chromosome condensation (RCC1) family protein 1Chr07:16157535–16169721 (+)3.497e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)8.456e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.745e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)5.441e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)9.294e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.241e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)2.033e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.429e-13
Glyma.15G124200 hypothetical protein AT1G50500:HIT1:Membrane trafficking VPS53 family protein 1Chr15:9861709–9873220 (+)9.753e-11
Glyma.15G124300 hypothetical protein NA 1Chr15:9875069–9875810 (+)9.753e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.682e-14
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)3.188e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)9.557e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)3.231e-13
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)1.06e-12
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)8.387e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)6.655e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)2.265e-13
Glyma.16G144300 hypothetical protein NA 1Chr16:30443185–30446450 (+)4.219e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)2.927e-14
Glyma.16G144900 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr16:30549575–30553059 (+)4.711e-11
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)1.589e-12
Glyma.16G145400 hypothetical protein AT3G12090:TET6:tetraspanin6 1Chr16:30624348–30627475 (+)5.191e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.823e-16
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)5.141e-13
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)8.125e-12
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)3.301e-11
Glyma.16G161600 hypothetical protein AT1G71720:PDE338:Nucleic acid-binding proteins superfamily 1Chr16:32094568–32100669 (+)3.024e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)4.445e-12