Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P21812

Metabolite ID
P21812
Deionized mass
532.0263 Da
Average m/z
533.0353
Average RT
13.6943
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
53
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

53 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 4Chr16:35831912–35835153 (+)1.046e-19
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)1.402e-15
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)9.664e-12
Glyma.07G068800 hypothetical protein NA 2Chr07:6211775–6221107 (-)1.815e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 2Chr16:35760178–35761852 (+)5.32e-12
Glyma.17G251200 hypothetical protein NA 2Chr17:40605249–40607536 (+)2.357e-11
Glyma.02G129200 hypothetical protein AT1G26160:AT1G26160:Metal-dependent phosphohydrolase 1Chr02:13217893–13226292 (+)5.562e-12
Glyma.02G130200 hypothetical protein AT1G68740:PHO1;H1:EXS (ERD1/XPR1/SYG1) family protein 1Chr02:13340016–13346701 (-)5.562e-12
Glyma.02G130700 hypothetical protein AT1G68750:PPC4:phosphoenolpyruvate carboxylase 4 1Chr02:13470428–13489647 (-)5.562e-12
Glyma.02G131600 hypothetical protein AT4G34020:DJ1C:Class I glutamine amidotransferase-like superfamily protein 1Chr02:13577916–13581914 (+)5.562e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.922e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.049e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.625e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.276e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)9.092e-11
Glyma.06G308800 hypothetical protein AT1G08470:SSL3:strictosidine synthase-like 3__AT5G22020:AT5G22020:Calcium-dependent phosphotriesterase superfamily prot… 1Chr06:49739828–49743086 (-)2.683e-11
Glyma.06G309400 hypothetical protein AT5G07040:AT5G07040:RING/U-box superfamily protein 1Chr06:49792092–49792649 (+)6.825e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.947e-14
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)4.062e-11
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)2.357e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)8.317e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)8.317e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.302e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.302e-14
Glyma.14G190300 hypothetical protein AT2G04240:XERICO:RING/U-box superfamily protein 1Chr14:45531920–45533895 (-)1.542e-12
Glyma.14G190400 hypothetical protein AT3G07650:COL9:CONSTANS-like 9 1Chr14:45536719–45544087 (-)1.542e-12
Glyma.14G198600 hypothetical protein NA 1Chr14:46360801–46362778 (+)9.838e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.533e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.749e-13
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.561e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.627e-14
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)3.412e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)3.412e-11
Glyma.16G195600 hypothetical protein NA 1Chr16:35719546–35722126 (-)1.048e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)1.563e-16
Glyma.17G251700 hypothetical protein NA 1Chr17:40625907–40628028 (-)5.429e-11
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)4.491e-12
Glyma.17G257100 hypothetical protein AT1G75660:XRN3:5'-3' exoribonuclease 3 1Chr17:41113121–41125026 (+)8.687e-11
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)6.263e-12
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)1.842e-12
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)3.183e-15
Glyma.19G231500 hypothetical protein AT3G05610:AT3G05610:Plant invertase/pectin methylesterase inhibitor superfamily 1Chr19:48206422–48209353 (+)2.382e-11
Glyma.20G022500 hypothetical protein NA 1Chr20:2342943–2353164 (+)8.547e-11
Glyma.20G026300 hypothetical protein AT1G26560:BGLU40:beta glucosidase 40 1Chr20:2894580–2905241 (+)9.717e-11
Glyma.20G034000 hypothetical protein AT2G03060:AGL30:AGAMOUS-like 30 1Chr20:4655939–4664465 (-)8.172e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)2.541e-12
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)1.976e-11
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)3.691e-11
Glyma.20G108000 hypothetical protein NA 1Chr20:35047833–35051623 (-)3.33e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)1.105e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)8.168e-13
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)5.257e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)8.773e-12