Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P21781

Metabolite ID
P21781
Deionized mass
465.1973 Da
Average m/z
466.2026
Average RT
13.6860
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
67
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

67 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)5.856e-14
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)3.534e-14
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)1.715e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)9.094e-12
Glyma.14G171400 hypothetical protein NA 2Chr14:42398866–42404627 (+)3.12e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.057e-13
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)3.786e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)3.014e-13
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)5.848e-12
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)2.652e-12
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)2.652e-12
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)2.652e-12
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)2.652e-12
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)2.652e-12
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)2.652e-12
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)2.652e-12
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)1.715e-11
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)6.195e-11
Glyma.03G145700 hypothetical protein AT3G58030:AT3G58030:RING/U-box superfamily protein 1Chr03:36109689–36112241 (+)5.532e-11
Glyma.03G146300 hypothetical protein AT2G41980:AT2G41980:Protein with RING/U-box and TRAF-like domain 1Chr03:36161959–36166525 (+)1.373e-11
Glyma.03G146600 hypothetical protein AT2G41950:AT2G41950:DNA-directed RNA polymerase subunit beta 1Chr03:36191841–36193872 (-)1.373e-11
Glyma.03G146700 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr03:36196552–36203201 (+)1.101e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)2.144e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)3.852e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.019e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)6.458e-16
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)6.458e-16
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.642e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.59e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.59e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.59e-13
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)5.57e-13
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)5.543e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.42e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.442e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.442e-15
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)2.947e-12
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)2.947e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.534e-14
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.534e-14
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.585e-13
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)7.544e-12
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)1.703e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)9.094e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)9.094e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)9.094e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)9.094e-12
Glyma.08G123100 hypothetical protein AT3G20050:TCP-1:T-complex protein 1 alpha subunit 1Chr08:9468076–9475710 (-)5.022e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)4.733e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.767e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)8.701e-12
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)5.229e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.728e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)4.728e-11
Glyma.13G050500 hypothetical protein NA 1Chr13:14674243–14683099 (-)1.045e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.598e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.234e-11
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)3.12e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.895e-11
Glyma.16G162400 hypothetical protein NA 1Chr16:32138248–32142967 (-)4.791e-11
Glyma.16G163200 hypothetical protein AT1G22770:GI:gigantea protein (GI) 1Chr16:32194131–32205240 (+)7.084e-11
Glyma.16G164200 PRX4 peroxidase NA 1Chr16:32307939–32310954 (-)5.996e-11
Glyma.17G227900 hypothetical protein AT5G11920:cwINV6:6-&1-fructan exohydrolase 1Chr17:38284476–38287851 (-)8.392e-11
Glyma.18G201900 hypothetical protein NA 1Chr18:48192545–48196624 (-)7.428e-12
Glyma.19G125300 hypothetical protein AT3G56880:AT3G56880:VQ motif-containing protein__AT2G41010:CAMBP25:calmodulin (CAM)-binding protein of 25 kDa 1Chr19:38346007–38347425 (-)8.031e-13
Glyma.19G125400 hypothetical protein AT3G12390:AT3G12390:Nascent polypeptide-associated complex (NAC), alpha subunit family protein 1Chr19:38371477–38374357 (-)8.031e-13
Glyma.19G125800 hypothetical protein AT2G40840:DPE2:disproportionating enzyme 2 1Chr19:38410642–38423531 (+)8.031e-13