Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P21701

Metabolite ID
P21701
Deionized mass
415.0827 Da
Average m/z
416.0891
Average RT
13.6557
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
56
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

56 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.124e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)9.363e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)5.893e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.586e-12
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)8.872e-11
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)8.872e-11
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)1.993e-11
Glyma.03G200900 hypothetical protein AT3G52500:AT3G52500:Eukaryotic aspartyl protease family protein 1Chr03:40955130–40957292 (+)9.773e-11
Glyma.03G201300 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family__AT5G06320:NHL3:NDR1/HIN1-like 3 1Chr03:40980745–40990121 (-)9.773e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.082e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.892e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.409e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.408e-16
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.408e-16
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.42e-18
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.756e-18
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.756e-18
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.756e-18
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)1.002e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.446e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.433e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.487e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.487e-13
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)4.065e-11
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)6.575e-11
Glyma.07G074200 hypothetical protein NA 1Chr07:6770137–6772132 (+)1.769e-12
Glyma.07G074800 hypothetical protein AT3G16840:AT3G16840:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr07:6806841–6815545 (-)9.424e-13
Glyma.08G130700 hypothetical protein AT3G26140:AT3G26140:Cellulase (glycosyl hydrolase family 5) protein 1Chr08:10030045–10033345 (-)2.467e-11
Glyma.08G130800 hypothetical protein AT1G67800:AT1G67800:Copine (Calcium-dependent phospholipid-binding protein) family 1Chr08:10036412–10041361 (-)1.543e-12
Glyma.08G131600 hypothetical protein AT3G26400:EIF4B1:eukaryotic translation initiation factor 4B1 1Chr08:10084185–10089827 (+)2.467e-11
Glyma.08G132000 hypothetical protein NA 1Chr08:10118233–10124754 (+)2.467e-11
Glyma.08G132100 hypothetical protein NA 1Chr08:10125619–10131070 (+)2.467e-11
Glyma.08G132700 hypothetical protein NA 1Chr08:10163807–10167725 (-)8.2e-12
Glyma.08G133600 hypothetical protein AT4G40010:SNRK2.7:SNF1-related protein kinase 2.7 1Chr08:10253382–10256582 (+)9.728e-11
Glyma.08G134100 hypothetical protein AT5G10310:AT5G10310:EPIDERMAL PATTERNING FACTOR-like protein 1Chr08:10287691–10288806 (+)1.082e-11
Glyma.08G134400 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein__AT2G22360:AT2G22360:DNAJ heat shock family protein 1Chr08:10299402–10307179 (-)1.082e-11
Glyma.08G134800 hypothetical protein AT4G39920:POR:C-CAP/cofactor C-like domain-containing protein 1Chr08:10341196–10342746 (-)1.082e-11
Glyma.08G142200 hypothetical protein NA 1Chr08:10833827–10834390 (-)7.26e-11
Glyma.08G142400 WRKY6 WRKY transcription factor 6 NA 1Chr08:10843433–10846761 (-)7.26e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.361e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)8.247e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)8.247e-11
Glyma.08G349800 Pentatricopeptide repeat-containing protein At1g06143 AT1G06143:AT1G06143:basic helix loop helix DNA-binding superfamily protein 1Chr08:46394123–46396571 (-)2.856e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.694e-11
Glyma.14G114100 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr14:13581722–13588412 (+)8.507e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.585e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)5.893e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)5.893e-11
Glyma.18G200500 hypothetical protein AT3G51860:CAX3:cation exchanger 3 1Chr18:48016361–48020799 (-)5.345e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.586e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)5.709e-11
Glyma.19G125300 hypothetical protein AT3G56880:AT3G56880:VQ motif-containing protein__AT2G41010:CAMBP25:calmodulin (CAM)-binding protein of 25 kDa 1Chr19:38346007–38347425 (-)5.566e-11
Glyma.19G125400 hypothetical protein AT3G12390:AT3G12390:Nascent polypeptide-associated complex (NAC), alpha subunit family protein 1Chr19:38371477–38374357 (-)5.566e-11
Glyma.19G125800 hypothetical protein AT2G40840:DPE2:disproportionating enzyme 2 1Chr19:38410642–38423531 (+)5.566e-11
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)7.476e-11
Glyma.20G101500 hypothetical protein NA 1Chr20:34454972–34459221 (-)2.509e-11