Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P21455

Metabolite ID
P21455
Deionized mass
238.1536 Da
Average m/z
239.1627
Average RT
13.5743
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
87
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

87 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 6Chr16:36856833–36863994 (-)4.981e-16
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)4.562e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)1.602e-14
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)1.684e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 2Chr08:9198213–9201688 (-)4.228e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)6.212e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.727e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.727e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.727e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.458e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.458e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)1.282e-11
Glyma.01G040000 hypothetical protein NA 1Chr01:4336374–4338196 (+)3.268e-11
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)1.908e-12
Glyma.01G171900 hypothetical protein AT5G66460:MAN7:Glycosyl hydrolase superfamily protein 1Chr01:50912520–50915454 (-)9.134e-11
Glyma.01G172900 hypothetical protein NA 1Chr01:51020276–51025649 (-)9.134e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)7.378e-12
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)6.801e-12
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)6.801e-12
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)6.801e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.334e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)6.122e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.192e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.872e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)9.093e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)9.093e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.285e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.084e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.084e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.084e-11
Glyma.05G217100 hypothetical protein AT1G64440:RHD1:NAD(P)-binding Rossmann-fold superfamily protein 1Chr05:39735139–39739763 (+)1.523e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.798e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.089e-12
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)1.304e-11
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)8.593e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)8.593e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)8.737e-11
Glyma.08G116400 hypothetical protein NA 1Chr08:8947598–8949573 (-)2.938e-11
Glyma.08G116700 hypothetical protein NA 1Chr08:8997512–9003565 (+)8.61e-11
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 1Chr08:9054060–9063297 (+)7.936e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)1.684e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)6.212e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)6.212e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)6.212e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)6.212e-12
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)8.481e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)8.481e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)7.368e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.734e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)3.124e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)8.636e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.727e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.727e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.727e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.727e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.727e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)3.533e-11
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 1Chr10:40628401–40633140 (-)7.442e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)5.896e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.177e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.802e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)3.784e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.705e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.705e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)4.222e-11
Glyma.13G133800 hypothetical protein AT3G53520:UXS1:UDP-glucuronic acid decarboxylase 1 1Chr13:24601574–24606756 (-)6.774e-11
Glyma.13G133900 hypothetical protein NA 1Chr13:24613843–24616128 (+)6.774e-11
Glyma.13G134000 hypothetical protein NA 1Chr13:24618272–24619048 (-)6.774e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.562e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.531e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)7.142e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)7.142e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.458e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)8.193e-11
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)4.308e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)3.36e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)3.36e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)9.075e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)1.71e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)3.246e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.519e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.519e-12
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)1.189e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)8.886e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.064e-11
Glyma.20G107300 hypothetical protein AT2G16920:UBC23:ubiquitin-conjugating enzyme 23 1Chr20:34991156–34999277 (+)6.114e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.253e-11