Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P21384

Metabolite ID
P21384
Deionized mass
242.1501 Da
Average m/z
243.1571
Average RT
13.5563
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
93
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

93 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 2Chr03:2202325–2234931 (+)7.491e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)1.029e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.029e-13
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)7.405e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)7.405e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)7.405e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.184e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)5.923e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)9.365e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.066e-12
Glyma.15G263500 hypothetical protein AT1G79440:ALDH5F1:aldehyde dehydrogenase 5F1 2Chr15:49664672–49682418 (+)5.6e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.273e-12
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.965e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.473e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.473e-14
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)1.036e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.021e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)6.698e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)9.021e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.194e-14
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)7.451e-15
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)5.132e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)5.378e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.176e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.087e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.169e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.169e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.085e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.515e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.515e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.515e-12
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)6.147e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.108e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.356e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.182e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.79e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.79e-11
Glyma.06G284900 BZIP50 bZIP transcription factor bZIP50 AT3G58120:BZIP61:Basic-leucine zipper (bZIP) transcription factor family protein__AT2G42380:BZIP34:Basic-leucine zipper… 1Chr06:47339957–47343650 (-)8.794e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)2.554e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.233e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)2.554e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)2.554e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.233e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)9.051e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)3.308e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.682e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.029e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.029e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.029e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.841e-12
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)2.841e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.904e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.983e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)7.405e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)7.405e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)7.404e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)7.405e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)7.405e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.709e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.422e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.422e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)8.819e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.923e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.869e-16
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.869e-16
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.869e-16
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)7.691e-11
Glyma.13G201300 hypothetical protein NA 1Chr13:31497499–31499001 (+)6.579e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)4.621e-14
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)8.422e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)6.014e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)9.365e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.066e-12
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)1.249e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)1.973e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.477e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.959e-13
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)6.819e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)6.819e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.976e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.076e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.535e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.619e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.965e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)7.122e-11
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)6.828e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)8.784e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)4.137e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)4.146e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.131e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.131e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)7.221e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.19e-12