Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P21219

Metabolite ID
P21219
Deionized mass
407.1462 Da
Average m/z
408.1553
Average RT
13.5120
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
71
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

71 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.513e-13
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)5.018e-13
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)4.781e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.241e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.973e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)7.23e-11
Glyma.14G210600 hypothetical protein AT5G17300:RVE1:Homeodomain-like superfamily protein 2Chr14:47557927–47561596 (-)3.868e-13
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 2Chr16:34364037–34367765 (-)2.637e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)1.917e-13
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)6.51e-11
Glyma.20G105900 hypothetical protein AT2G16990:AT2G16990:Major facilitator superfamily protein 2Chr20:34832271–34839955 (-)3.692e-11
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)3.863e-12
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)3.611e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)8.426e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.119e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)4.574e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.429e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.388e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.585e-14
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)1.584e-11
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)9.069e-13
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)9.069e-13
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)2.899e-11
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 1Chr08:9054060–9063297 (+)8.895e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)4.781e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)8.241e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)8.241e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.241e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.241e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.846e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)9.352e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.484e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)5.269e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)5.269e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)5.269e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)5.269e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)4.648e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)2.938e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.836e-11
Glyma.14G083200 hypothetical protein NA 1Chr14:7249145–7256947 (-)1.585e-13
Glyma.14G084200 hypothetical protein NA 1Chr14:7375402–7379417 (-)4.471e-15
Glyma.14G097400 hypothetical protein AT5G11960:AT5G11960:magnesium transporter, putative (DUF803) 1Chr14:9185419–9190929 (-)7.68e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)7.23e-11
Glyma.14G208900 hypothetical protein AT1G17200:AT1G17200:Uncharacterized protein family (UPF0497) 1Chr14:47451105–47454596 (-)2.743e-12
Glyma.14G209000 hypothetical protein NA 1Chr14:47461788–47463395 (+)2.743e-12
Glyma.14G209100 hypothetical protein NA 1Chr14:47464224–47465243 (+)2.743e-12
Glyma.14G209800 hypothetical protein AT5G17240:SDG40:SET domain group 40 1Chr14:47508042–47511868 (+)2.743e-12
Glyma.14G209900 hypothetical protein NA 1Chr14:47515899–47521687 (+)2.743e-12
Glyma.14G211000 IDH1 AT1G65930:cICDH:cytosolic NADP+-dependent isocitrate dehydrogenase 1Chr14:47592207–47597473 (+)2.306e-12
Glyma.14G211100 hypothetical protein AT1G65960:GAD2:glutamate decarboxylase 2 1Chr14:47603425–47609079 (+)2.306e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)1.924e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)6.797e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)7.623e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.483e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)1.787e-11
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)2.278e-15
Glyma.16G207600 hypothetical protein AT5G23550:AT5G23550:Got1/Sft2-like vescicle transport protein family 1Chr16:36733685–36738992 (+)1.317e-11
Glyma.16G207700 hypothetical protein AT4G15093:LigB:catalytic LigB subunit of aromatic ring-opening dioxygenase family 1Chr16:36739878–36743378 (-)1.385e-12
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)6.196e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)5.018e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)8.158e-15
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)8.158e-15
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.013e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.013e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)8.117e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)6.51e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)3.508e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)8.731e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)9.066e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)9.115e-12
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)2.635e-11