Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P21029

Metabolite ID
P21029
Deionized mass
949.2613 Da
Average m/z
950.2654
Average RT
13.4706
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
105
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

105 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 4Chr16:30864919–30872425 (+)5.467e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.248e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.116e-14
Glyma.01G045600 hypothetical protein NA 2Chr01:5242432–5245038 (-)1.797e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)1.6e-12
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)7.521e-15
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.461e-13
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.461e-13
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.461e-13
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)2.433e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.266e-15
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 2Chr12:3949453–3957386 (-)3.244e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)9.551e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)9.551e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)2.507e-11
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)1.566e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)6.715e-12
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)1.086e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)4.564e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.248e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)7.754e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)1.797e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.993e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.993e-11
Glyma.02G138200 hypothetical protein NA 1Chr02:14307786–14310106 (-)3.324e-13
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)2.657e-12
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)2.94e-14
Glyma.02G294900 hypothetical protein AT5G55220:AT5G55220:trigger factor type chaperone family protein 1Chr02:47300149–47306133 (+)6.101e-11
Glyma.02G295000 hypothetical protein AT4G26770:AT4G26770:Phosphatidate cytidylyltransferase family protein 1Chr02:47306160–47312036 (-)6.101e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)7.711e-13
Glyma.03G002100 hypothetical protein AT5G01930:MAN6:Glycosyl hydrolase superfamily protein 1Chr03:211934–216522 (+)4.483e-13
Glyma.03G002400 hypothetical protein AT5G25780:EIF3B-2:eukaryotic translation initiation factor 3B-2 1Chr03:234217–238375 (-)4.483e-13
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)2.271e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)3.878e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)5.855e-11
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)4.826e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.105e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.345e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.345e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.528e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)5.437e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)1.72e-11
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)6.038e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)1.564e-13
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)1.93e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.393e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.116e-14
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.116e-14
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)6.562e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.266e-14
Glyma.08G227900 hypothetical protein NA 1Chr08:18551920–18567339 (-)2.218e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)1.964e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)7.991e-12
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)2.059e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.293e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.278e-11
Glyma.09G234200 hypothetical protein NA 1Chr09:45661404–45666997 (+)1.831e-12
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)3.867e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)3.161e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.461e-13
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.461e-13
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.461e-13
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)1.277e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.461e-13
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.461e-13
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)1.102e-12
Glyma.09G281400 hypothetical protein AT3G18620:AT3G18620:DHHC-type zinc finger family protein 1Chr09:49668985–49676216 (-)4.48e-11
Glyma.09G281700 hypothetical protein NA 1Chr09:49705303–49733182 (-)4.48e-11
Glyma.10G038200 hypothetical protein NA 1Chr10:3394443–3395342 (-)3.603e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.901e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)3.158e-14
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)4.709e-14
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.087e-17
Glyma.12G054500 hypothetical protein NA 1Chr12:3938604–3943724 (+)5.732e-14
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.992e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.992e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.184e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.184e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)9.551e-12
Glyma.13G142200 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr13:25483702–25502265 (+)2.789e-13
Glyma.13G142500 hypothetical protein NA 1Chr13:25548232–25550097 (+)6.09e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)2.2e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)7.142e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)7.144e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)7.144e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.907e-15
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)1.035e-11
Glyma.14G063600 hypothetical protein AT5G05840:AT5G05840:replication factor C subunit, putative (DUF620) 1Chr14:5163603–5167769 (+)9.981e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.09e-15
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.887e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)8.033e-12
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)4.912e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)3.892e-11
Glyma.17G171600 hypothetical protein NA 1Chr17:16423055–16437374 (+)3.473e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)6.569e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)2.741e-13
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)7.247e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)3.127e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)4.564e-14
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)4.019e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.376e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.376e-15
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.61e-13
Glyma.19G246100 hypothetical protein NA 1Chr19:49285339–49287223 (+)5.404e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)5.169e-11